FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4527, 576 aa 1>>>pF1KE4527 576 - 576 aa - 576 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7432+/-0.00036; mu= 3.2246+/- 0.022 mean_var=193.5265+/-39.080, 0's: 0 Z-trim(120.1): 6 B-trim: 328 in 2/52 Lambda= 0.092194 statistics sampled from 34972 (34979) to 34972 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.41), width: 16 Scan time: 11.820 The best scores are: opt bits E(85289) NP_004636 (OMIM: 600272) coilin [Homo sapiens] ( 576) 3787 516.3 1e-145 >>NP_004636 (OMIM: 600272) coilin [Homo sapiens] (576 aa) initn: 3787 init1: 3787 opt: 3787 Z-score: 2736.9 bits: 516.3 E(85289): 1e-145 Smith-Waterman score: 3787; 100.0% identity (100.0% similar) in 576 aa overlap (1-576:1-576) 10 20 30 40 50 60 pF1KE4 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV 490 500 510 520 530 540 550 560 570 pF1KE4 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA :::::::::::::::::::::::::::::::::::: NP_004 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA 550 560 570 576 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:13:42 2016 done: Sun Nov 6 00:13:44 2016 Total Scan time: 11.820 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]