FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5303, 263 aa 1>>>pF1KE5303 263 - 263 aa - 263 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9741+/-0.000396; mu= 16.2898+/- 0.025 mean_var=60.1509+/-12.538, 0's: 0 Z-trim(110.9): 21 B-trim: 998 in 1/49 Lambda= 0.165369 statistics sampled from 19350 (19361) to 19350 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.227), width: 16 Scan time: 4.170 The best scores are: opt bits E(85289) NP_000999 (OMIM: 470000) 40S ribosomal protein S4, ( 263) 1756 427.5 1.2e-119 XP_016885550 (OMIM: 470000) PREDICTED: 40S ribosom ( 272) 1749 425.8 4e-119 NP_001034656 (OMIM: 400030,415000) 40S ribosomal p ( 263) 1671 407.2 1.5e-113 NP_000998 (OMIM: 312760) 40S ribosomal protein S4, ( 263) 1668 406.5 2.5e-113 >>NP_000999 (OMIM: 470000) 40S ribosomal protein S4, Y i (263 aa) initn: 1756 init1: 1756 opt: 1756 Z-score: 2269.0 bits: 427.5 E(85289): 1.2e-119 Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG ::::::::::::::::::::::: NP_000 GKGIRLTVAEERDKRLATKQSSG 250 260 >>XP_016885550 (OMIM: 470000) PREDICTED: 40S ribosomal p (272 aa) initn: 1749 init1: 1749 opt: 1749 Z-score: 2259.7 bits: 425.8 E(85289): 4e-119 Smith-Waterman score: 1749; 100.0% identity (100.0% similar) in 262 aa overlap (2-263:11-272) 10 20 30 40 50 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNR :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLGRPAKFSKARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIIN 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNG 190 200 210 220 230 240 240 250 260 pF1KE5 NKPWISLPRGKGIRLTVAEERDKRLATKQSSG :::::::::::::::::::::::::::::::: XP_016 NKPWISLPRGKGIRLTVAEERDKRLATKQSSG 250 260 270 >>NP_001034656 (OMIM: 400030,415000) 40S ribosomal prote (263 aa) initn: 1671 init1: 1671 opt: 1671 Z-score: 2159.4 bits: 407.2 E(85289): 1.5e-113 Smith-Waterman score: 1671; 93.9% identity (98.9% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::.:.:::::::::.::::::.::::::::::::::::.::: :::::::::::: NP_001 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL ::::::::::::.:::::::::::::::::::.:::::::::::::::: .::::::::. NP_001 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR ::::.::::::::::::::::::: ::::::::::::::::.:::::::::::::::::: NP_001 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG :::::::.:::::::::.::::: NP_001 GKGIRLTIAEERDKRLAAKQSSG 250 260 >>NP_000998 (OMIM: 312760) 40S ribosomal protein S4, X i (263 aa) initn: 1668 init1: 1668 opt: 1668 Z-score: 2155.5 bits: 406.5 E(85289): 2.5e-113 Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: NP_000 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: :::: NP_000 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .::::::::: NP_000 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR ::: :::::::.:::::::::::::::::::::::::::::::::::::.:::::::::: NP_000 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG :::::::.:::::::::.::::: NP_000 GKGIRLTIAEERDKRLAAKQSSG 250 260 263 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:29:15 2016 done: Tue Nov 8 07:29:16 2016 Total Scan time: 4.170 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]