FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1489, 455 aa 1>>>pF1KE1489 455 - 455 aa - 455 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8114+/-0.000903; mu= 7.6622+/- 0.054 mean_var=189.9039+/-37.680, 0's: 0 Z-trim(113.5): 41 B-trim: 66 in 2/51 Lambda= 0.093069 statistics sampled from 14075 (14111) to 14075 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.433), width: 16 Scan time: 3.470 The best scores are: opt bits E(32554) CCDS8542.1 TNFRSF1A gene_id:7132|Hs108|chr12 ( 455) 3212 443.5 2.1e-124 CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 ( 426) 483 77.1 4e-14 >>CCDS8542.1 TNFRSF1A gene_id:7132|Hs108|chr12 (455 aa) initn: 3212 init1: 3212 opt: 3212 Z-score: 2347.1 bits: 443.5 E(32554): 2.1e-124 Smith-Waterman score: 3212; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455) 10 20 30 40 50 60 pF1KE1 MGLSTVPDLLLPLVLLELLVGIYPSGVIGLVPHLGDREKRDSVCPQGKYIHPQNNSICCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 MGLSTVPDLLLPLVLLELLVGIYPSGVIGLVPHLGDREKRDSVCPQGKYIHPQNNSICCT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 KCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 RDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SCSNCKKSLECTKLCLPQIENVKGTEDSGTTVLLPLVIFFGLCLLSLLFIGLMYRYQRWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 SCSNCKKSLECTKLCLPQIENVKGTEDSGTTVLLPLVIFFGLCLLSLLFIGLMYRYQRWK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SKLYSIVCGKSTPEKEGELEGTTTKPLAPNPSFSPTPGFTPTLGFSPVPSSTFTSSSTYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 SKLYSIVCGKSTPEKEGELEGTTTKPLAPNPSFSPTPGFTPTLGFSPVPSSTFTSSSTYT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PGDCPNFAAPRREVAPPYQGADPILATALASDPIPNPLQKWEDSAHKPQSLDTDDPATLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 PGDCPNFAAPRREVAPPYQGADPILATALASDPIPNPLQKWEDSAHKPQSLDTDDPATLY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 AVVENVPPLRWKEFVRRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 AVVENVPPLRWKEFVRRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLEL 370 380 390 400 410 420 430 440 450 pF1KE1 LGRVLRDMDLLGCLEDIEEALCGPAALPPAPSLLR ::::::::::::::::::::::::::::::::::: CCDS85 LGRVLRDMDLLGCLEDIEEALCGPAALPPAPSLLR 430 440 450 >>CCDS72.1 TNFRSF25 gene_id:8718|Hs108|chr1 (426 aa) initn: 415 init1: 132 opt: 483 Z-score: 367.1 bits: 77.1 E(32554): 4e-14 Smith-Waterman score: 538; 28.9% identity (50.8% similar) in 429 aa overlap (34-444:20-426) 10 20 30 40 50 60 pF1KE1 STVPDLLLPLVLLELLVGIYPSGVIGLVPHLGDREK---RDSVCPQGKYIHPQNNSICCT :: : . :. : . .: . . .:: CCDS72 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCR 10 20 30 40 70 80 90 100 110 pF1KE1 KCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLR-HCLSCSKCRKEMGQVEISSCTV : : :: : : .. : : . .: : ::: .: :. : .. .:: . .:.. CCDS72 GCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSA 50 60 70 80 90 100 120 130 140 150 160 pF1KE1 DRDTVCGCRKNQYRHYWSENLFQC-----FNCSLCLN-GTVH----LSCQEKQNTVCTCH :: :::. . . . .. :: : :. ::. :..: : :..... :: CCDS72 VADTRCGCKPGWFVEC---QVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCL 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 AGFFLRENECVSCSNCKKSLECTKLCLPQIENVKGTEDSGTTVLLPLVIFFGLCLLSLLF ::. . . :::: . :: . : .. . . :. :.. :: . :: CCDS72 PGFYEHGDGCVSCPTPPPSLAGAPWGAVQSAVPLSVAGGRVGVFWVQVLLAGLVVPLLLG 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE1 IGLMYRYQRWKSKLYSIVCGKSTPEKEGELEGTTTKPLAPNPSFSPTPGFTPTLGFSPVP : : :.. : : .. : . :.: :. .: . ..: : CCDS72 ATLTYTYRH---------CWPHKPLVTADEAG--MEALTPPPATHLSPLDSAHTLLAP-P 230 240 250 260 270 290 300 310 320 330 340 pF1KE1 SSTFTSSSTYTPGDC--PNFAAPRREVAPPYQGA-DPILATALASDPIPNPLQKWEDSAH .:. .. :. :.. .. . : . : . . ::. : : . :. : CCDS72 DSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSWDQLPSRALG--PAAAPTLSPESPAG 280 290 300 310 320 330 350 360 370 380 390 400 pF1KE1 KPQSLDTDDPATLYAVVENVPPLRWKEFVRRLGLSDHEIDRLELQNGRCLREAQYSMLAT .: . : :: :.. :: ::::::: ::: . ::. .:.. :: .:. :: :: CCDS72 SPAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKR 340 350 360 370 380 390 410 420 430 440 450 pF1KE1 WRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALC-GPAALPPAPSLLR ::.. : : : . .:. : : ::.::.. : :: CCDS72 WRQQQP---AGLGAVYAALERMGLDGCVEDLRSRLQRGP 400 410 420 455 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:57:41 2016 done: Mon Nov 7 01:57:41 2016 Total Scan time: 3.470 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]