FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3946, 291 aa 1>>>pF1KE3946 291 - 291 aa - 291 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4923+/-0.000913; mu= 9.7550+/- 0.055 mean_var=87.8800+/-17.502, 0's: 0 Z-trim(107.3): 9 B-trim: 0 in 0/50 Lambda= 0.136814 statistics sampled from 9510 (9513) to 9510 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.292), width: 16 Scan time: 2.500 The best scores are: opt bits E(32554) CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2 ( 291) 1939 392.5 1.9e-109 CCDS695.1 RPF1 gene_id:80135|Hs108|chr1 ( 349) 467 102.0 6.6e-22 >>CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2 (291 aa) initn: 1939 init1: 1939 opt: 1939 Z-score: 2078.3 bits: 392.5 E(32554): 1.9e-109 Smith-Waterman score: 1939; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291) 10 20 30 40 50 60 pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS21 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 250 260 270 280 290 >>CCDS695.1 RPF1 gene_id:80135|Hs108|chr1 (349 aa) initn: 440 init1: 233 opt: 467 Z-score: 506.8 bits: 102.0 E(32554): 6.6e-22 Smith-Waterman score: 467; 30.4% identity (63.1% similar) in 293 aa overlap (7-288:60-349) 10 20 30 pF1KE3 MLRREARLRREYLYRKAREEAQR---SAQERKERLR . ::. .. . ... .. .:... .. : CCDS69 GAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKER 30 40 50 60 70 80 40 50 60 70 80 pF1KE3 RALEEN---RLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEY--RWAGVEDPKVMIT .:: .. . .: . . . . ... .: : . ... ::. . .::..:: CCDS69 EALGDKAPPKPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQTSPKILIT 90 100 110 120 130 140 90 100 110 120 130 140 pF1KE3 TSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVG :: : .: . ..:. :.:... . : . .. : : :::.:..: : :: : CCDS69 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG 150 160 170 180 190 200 150 160 170 180 190 200 pF1KE3 LIVSHLPFGPTAYFTLCNVVMRHDIPDLGT-MSEAKPHLITHGFSSRLGKRVSDILRYLF ::.:::: ::::.: . .: .:..: : .: :..: ..:..:::. .. .. :: CCDS69 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF 210 220 230 240 250 260 210 220 230 240 250 260 pF1KE3 P-VPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQE : :. ...: :: :: ::: :: : : ....: . :.:::: ::: .. ::.... CCDS69 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSK 270 280 290 300 310 320 270 280 290 pF1KE3 ATADVEWRWHPYT-NTARKRVFLSTE .. :: .: .:.:.. : CCDS69 Y-GEYEWVHKPREMDTSRRKFHL 330 340 291 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:42:01 2016 done: Sun Nov 6 08:42:01 2016 Total Scan time: 2.500 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]