Result of FASTA (omim) for
pFN21AE6247
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6247, 212 aa
1>>>pF1KE6247 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1158+/-0.000387; mu= 6.1822+/- 0.024
mean_var=118.6228+/-23.869, 0's: 0 Z-trim(114.9): 40 B-trim: 179 in 2/53
Lambda= 0.117758
statistics sampled from 24899 (24939) to 24899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.292), width: 16
Scan time: 3.880
The best scores are: opt bits E(85289)
NP_004278 (OMIM: 604027,614018) Golgi SNAP recepto ( 212) 1373 243.8 1.6e-64
XP_016880874 (OMIM: 604027,614018) PREDICTED: Golg ( 211) 1356 240.9 1.2e-63
NP_473363 (OMIM: 604027,614018) Golgi SNAP recepto ( 213) 1265 225.4 5.2e-59
XP_011523804 (OMIM: 604027,614018) PREDICTED: Golg ( 196) 1257 224.1 1.3e-58
XP_016880873 (OMIM: 604027,614018) PREDICTED: Golg ( 226) 1258 224.3 1.3e-58
XP_011523803 (OMIM: 604027,614018) PREDICTED: Golg ( 197) 1257 224.1 1.3e-58
XP_016880877 (OMIM: 604027,614018) PREDICTED: Golg ( 202) 1257 224.1 1.3e-58
XP_006722253 (OMIM: 604027,614018) PREDICTED: Golg ( 214) 1257 224.1 1.3e-58
XP_016880872 (OMIM: 604027,614018) PREDICTED: Golg ( 234) 1257 224.1 1.5e-58
NP_001308062 (OMIM: 604027,614018) Golgi SNAP rece ( 257) 1257 224.1 1.6e-58
XP_016880879 (OMIM: 604027,614018) PREDICTED: Golg ( 194) 1242 221.5 7.3e-58
XP_016880878 (OMIM: 604027,614018) PREDICTED: Golg ( 194) 1242 221.5 7.3e-58
XP_016880867 (OMIM: 604027,614018) PREDICTED: Golg ( 256) 1240 221.2 1.2e-57
XP_016880880 (OMIM: 604027,614018) PREDICTED: Golg ( 192) 1140 204.2 1.2e-52
XP_016880869 (OMIM: 604027,614018) PREDICTED: Golg ( 239) 1126 201.9 7.4e-52
XP_016880868 (OMIM: 604027,614018) PREDICTED: Golg ( 239) 1126 201.9 7.4e-52
XP_016880871 (OMIM: 604027,614018) PREDICTED: Golg ( 238) 1109 199.0 5.5e-51
XP_016880870 (OMIM: 604027,614018) PREDICTED: Golg ( 238) 1109 199.0 5.5e-51
NP_001012529 (OMIM: 604027,614018) Golgi SNAP rece ( 195) 1043 187.7 1.1e-47
NP_001317181 (OMIM: 604027,614018) Golgi SNAP rece ( 165) 736 135.5 4.8e-32
XP_016880881 (OMIM: 604027,614018) PREDICTED: Golg ( 179) 736 135.5 5.1e-32
XP_016880875 (OMIM: 604027,614018) PREDICTED: Golg ( 210) 736 135.6 5.9e-32
XP_016880882 (OMIM: 604027,614018) PREDICTED: Golg ( 164) 719 132.6 3.5e-31
XP_016880876 (OMIM: 604027,614018) PREDICTED: Golg ( 209) 719 132.7 4.3e-31
NP_001308063 (OMIM: 604027,614018) Golgi SNAP rece ( 147) 605 113.2 2.2e-25
XP_016880884 (OMIM: 604027,614018) PREDICTED: Golg ( 147) 605 113.2 2.2e-25
XP_016880883 (OMIM: 604027,614018) PREDICTED: Golg ( 161) 605 113.3 2.3e-25
>>NP_004278 (OMIM: 604027,614018) Golgi SNAP receptor co (212 aa)
initn: 1373 init1: 1373 opt: 1373 Z-score: 1279.5 bits: 243.8 E(85289): 1.6e-64
Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::::::::::::::::::::
NP_004 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
190 200 210
>>XP_016880874 (OMIM: 604027,614018) PREDICTED: Golgi SN (211 aa)
initn: 1152 init1: 1152 opt: 1356 Z-score: 1264.0 bits: 240.9 E(85289): 1.2e-63
Smith-Waterman score: 1356; 99.5% identity (99.5% similar) in 212 aa overlap (1-212:1-211)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
XP_016 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHI-ENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
120 130 140 150 160 170
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::::::::::::::::::::
XP_016 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
180 190 200 210
>>NP_473363 (OMIM: 604027,614018) Golgi SNAP receptor co (213 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1180.3 bits: 225.4 E(85289): 5.2e-59
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_473 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
:::::::::::::::
NP_473 LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS
190 200 210
>>XP_011523804 (OMIM: 604027,614018) PREDICTED: Golgi SN (196 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1173.5 bits: 224.1 E(85289): 1.3e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
XP_011 LIEKRAFQDKYFMIAM
190
>>XP_016880873 (OMIM: 604027,614018) PREDICTED: Golgi SN (226 aa)
initn: 1257 init1: 1257 opt: 1258 Z-score: 1173.5 bits: 224.3 E(85289): 1.3e-58
Smith-Waterman score: 1258; 97.5% identity (98.0% similar) in 202 aa overlap (1-200:1-202)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGG--MLLTCVVMFLVVQYLT
:::::::::::::: :.::
XP_016 LIEKRAFQDKYFMIDKEHMFLTRECALFPTHSHHWRSLSFGEVGTG
190 200 210 220
>>XP_011523803 (OMIM: 604027,614018) PREDICTED: Golgi SN (197 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1173.5 bits: 224.1 E(85289): 1.3e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
XP_011 LIEKRAFQDKYFMIATN
190
>>XP_016880877 (OMIM: 604027,614018) PREDICTED: Golgi SN (202 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1173.4 bits: 224.1 E(85289): 1.3e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
XP_016 LIEKRAFQDKYFMIAANRFLDF
190 200
>>XP_006722253 (OMIM: 604027,614018) PREDICTED: Golgi SN (214 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1173.0 bits: 224.1 E(85289): 1.3e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
XP_006 LIEKRAFQDKYFMIEPPKFLSQQESNKDLKRLDI
190 200 210
>>XP_016880872 (OMIM: 604027,614018) PREDICTED: Golgi SN (234 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1172.4 bits: 224.1 E(85289): 1.5e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
XP_016 LIEKRAFQDKYFMIETRSHHVAQNGPELLSSRDPPASASRSAGIIGEETEAQRG
190 200 210 220 230
>>NP_001308062 (OMIM: 604027,614018) Golgi SNAP receptor (257 aa)
initn: 1257 init1: 1257 opt: 1257 Z-score: 1171.8 bits: 224.1 E(85289): 1.6e-58
Smith-Waterman score: 1257; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR
130 140 150 160 170 180
190 200 210
pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT
::::::::::::::
NP_001 LIEKRAFQDKYFMIETRSHHVAQNGPELLSSRDPPASASRSAGIIGMSHHPDLQIPFELR
190 200 210 220 230 240
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:26:11 2016 done: Tue Nov 8 11:26:11 2016
Total Scan time: 3.880 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]