FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6247, 212 aa 1>>>pF1KE6247 212 - 212 aa - 212 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5003+/-0.000973; mu= 3.4155+/- 0.058 mean_var=106.0882+/-21.663, 0's: 0 Z-trim(107.4): 21 B-trim: 248 in 1/52 Lambda= 0.124520 statistics sampled from 9551 (9566) to 9551 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.294), width: 16 Scan time: 1.510 The best scores are: opt bits E(32554) CCDS42355.1 GOSR2 gene_id:9570|Hs108|chr17 ( 212) 1373 256.9 6.9e-69 CCDS11507.1 GOSR2 gene_id:9570|Hs108|chr17 ( 213) 1265 237.5 4.8e-63 CCDS45719.1 GOSR2 gene_id:9570|Hs108|chr17 ( 195) 1043 197.6 4.5e-51 CCDS82148.1 GOSR2 gene_id:9570|Hs108|chr17 ( 165) 736 142.4 1.5e-34 >>CCDS42355.1 GOSR2 gene_id:9570|Hs108|chr17 (212 aa) initn: 1373 init1: 1373 opt: 1373 Z-score: 1350.2 bits: 256.9 E(32554): 6.9e-69 Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212) 10 20 30 40 50 60 pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 130 140 150 160 170 180 190 200 210 pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT :::::::::::::::::::::::::::::::: CCDS42 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT 190 200 210 >>CCDS11507.1 GOSR2 gene_id:9570|Hs108|chr17 (213 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1245.4 bits: 237.5 E(32554): 4.8e-63 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR 130 140 150 160 170 180 190 200 210 pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT ::::::::::::::: CCDS11 LIEKRAFQDKYFMIGTQGSCQTAHFGGRSAGSS 190 200 210 >>CCDS45719.1 GOSR2 gene_id:9570|Hs108|chr17 (195 aa) initn: 1038 init1: 1038 opt: 1043 Z-score: 1030.5 bits: 197.6 E(32554): 4.5e-51 Smith-Waterman score: 1043; 88.8% identity (92.5% similar) in 187 aa overlap (1-182:1-187) 10 20 30 40 50 60 pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLK-----GTQKKILDIANMLGLS ::::::::::::::::::::::::::::::::::::::: : ..: .. . .: CCDS45 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKVGSLLGDREKASCFSLIQQFS 130 140 150 160 170 180 180 190 200 210 pF1KE6 NTVMRLIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT : :. :: CCDS45 NCVYILITCPQIVIF 190 >>CCDS82148.1 GOSR2 gene_id:9570|Hs108|chr17 (165 aa) initn: 736 init1: 736 opt: 736 Z-score: 733.6 bits: 142.4 E(32554): 1.5e-34 Smith-Waterman score: 963; 77.8% identity (77.8% similar) in 212 aa overlap (1-212:1-165) 10 20 30 40 50 60 pF1KE6 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPM :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 NKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTN-------- 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 DESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMR ::::::::::::::::::::: CCDS82 ---------------------------------------GTQKKILDIANMLGLSNTVMR 120 130 190 200 210 pF1KE6 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT :::::::::::::::::::::::::::::::: CCDS82 LIEKRAFQDKYFMIGGMLLTCVVMFLVVQYLT 140 150 160 212 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:26:10 2016 done: Tue Nov 8 11:26:10 2016 Total Scan time: 1.510 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]