FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1558, 360 aa 1>>>pF1KE1558 360 - 360 aa - 360 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2598+/-0.000376; mu= 16.9979+/- 0.024 mean_var=72.3714+/-14.517, 0's: 0 Z-trim(113.6): 16 B-trim: 29 in 1/50 Lambda= 0.150762 statistics sampled from 22950 (22957) to 22950 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.269), width: 16 Scan time: 8.410 The best scores are: opt bits E(85289) NP_036274 (OMIM: 607089) cyclin-D1-binding protein ( 360) 2343 518.9 7e-147 XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-b ( 404) 1824 406.0 7.3e-113 NP_001028676 (OMIM: 615949,615972) transmembrane p ( 226) 175 47.2 4.3e-05 NP_001288675 (OMIM: 615949,615972) transmembrane p ( 226) 175 47.2 4.3e-05 NP_056359 (OMIM: 615949,615972) transmembrane prot ( 226) 175 47.2 4.3e-05 >>NP_036274 (OMIM: 607089) cyclin-D1-binding protein 1 [ (360 aa) initn: 2343 init1: 2343 opt: 2343 Z-score: 2758.0 bits: 518.9 E(85289): 7e-147 Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 pF1KE1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL 310 320 330 340 350 360 >>XP_006720511 (OMIM: 607089) PREDICTED: cyclin-D1-bindi (404 aa) initn: 1824 init1: 1824 opt: 1824 Z-score: 2147.2 bits: 406.0 E(85289): 7.3e-113 Smith-Waterman score: 1824; 100.0% identity (100.0% similar) in 277 aa overlap (84-360:128-404) 60 70 80 90 100 110 pF1KE1 RRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGIT :::::::::::::::::::::::::::::: XP_006 LQPQSPPWLRLWSSSGTWRRSCGCSCLECGETQKFCEQVHAAIKAFIAVYYLLPKDQGIT 100 110 120 130 140 150 120 130 140 150 160 170 pF1KE1 LRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAA 160 170 180 190 200 210 180 190 200 210 220 230 pF1KE1 LLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYW 220 230 240 250 260 270 240 250 260 270 280 290 pF1KE1 SEDDQELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SEDDQELIIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLAL 280 290 300 310 320 330 300 310 320 330 340 350 pF1KE1 SIYPPMCHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SIYPPMCHLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKEL 340 350 360 370 380 390 360 pF1KE1 TQSELEL ::::::: XP_006 TQSELEL 400 >>NP_001028676 (OMIM: 615949,615972) transmembrane prote (226 aa) initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05 Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202) 120 130 140 150 160 170 pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT : :. .. ..:.: ::: :. NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR 10 20 30 40 180 190 200 210 220 230 pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ . . : :: . .: :.:. .: : . .: :.: : :: . NP_001 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS 50 60 70 80 240 250 260 270 280 290 pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP :. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.:: NP_001 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP 90 100 110 120 130 140 300 310 320 330 340 350 pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ :. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..: NP_001 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL 150 160 170 180 190 200 360 pF1KE1 SELEL NP_001 ASEPDKGLPGPEGFLQEQSAI 210 220 >>NP_001288675 (OMIM: 615949,615972) transmembrane prote (226 aa) initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05 Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202) 120 130 140 150 160 170 pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT : :. .. ..:.: ::: :. NP_001 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR 10 20 30 40 180 190 200 210 220 230 pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ . . : :: . .: :.:. .: : . .: :.: : :: . NP_001 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS 50 60 70 80 240 250 260 270 280 290 pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP :. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.:: NP_001 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP 90 100 110 120 130 140 300 310 320 330 340 350 pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ :. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..: NP_001 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL 150 160 170 180 190 200 360 pF1KE1 SELEL NP_001 ASEPDKGLPGPEGFLQEQSAI 210 220 >>NP_056359 (OMIM: 615949,615972) transmembrane protein (226 aa) initn: 118 init1: 99 opt: 175 Z-score: 212.4 bits: 47.2 E(85289): 4.3e-05 Smith-Waterman score: 188; 26.6% identity (55.6% similar) in 207 aa overlap (149-352:17-202) 120 130 140 150 160 170 pF1KE1 RGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLT : :. .. ..:.: ::: :. NP_056 METVVIVAIGVLATIFLASFAALVLVCRQRYCRPRD------LLQR 10 20 30 40 180 190 200 210 220 230 pF1KE1 KNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQ . . : :: . .: :.:. .: : . .: :.: : :: . NP_056 YDSKPIVDLIGAME---TQSEPSELELDDVVITNP----HIEAIL---ENED--WIEDAS 50 60 70 80 240 250 260 270 280 290 pF1KE1 ELIIPCLALVRASKACLKKIRMLVAENGKKDQV-AQLDDIVDISDEISPSVDDLALSIYP :. :.:... .. .:. .. .: : .. :...::. .. .::: :::.. :.:: NP_056 GLMSHCIAILKICHTLTEKLVAMTMGSGAKMKTSASVSDIIVVAKRISPRVDDVVKSMYP 90 100 110 120 130 140 300 310 320 330 340 350 pF1KE1 PMCH--LTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQ :. : .: ..: :.:: . .: .: :.: . :: ..: .. .. ..: NP_056 PLDPKLLDAR-TTALLLSVSHLVLVTRNACHLTGGLD--WIDQSLSAAEEHLEVLREAAL 150 160 170 180 190 200 360 pF1KE1 SELEL NP_056 ASEPDKGLPGPEGFLQEQSAI 210 220 360 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:02:34 2016 done: Mon Nov 7 02:02:35 2016 Total Scan time: 8.410 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]