FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1558, 360 aa
  1>>>pF1KE1558 360 - 360 aa - 360 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5073+/-0.000872; mu= 15.5031+/- 0.053
 mean_var=68.2247+/-13.725, 0's: 0 Z-trim(106.4): 8  B-trim: 256 in 1/49
 Lambda= 0.155276
 statistics sampled from 8955 (8958) to 8955 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.275), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS10092.1 CCNDBP1 gene_id:23582|Hs108|chr15      ( 360) 2343 533.8 8.5e-152


>>CCDS10092.1 CCNDBP1 gene_id:23582|Hs108|chr15           (360 aa)
 initn: 2343 init1: 2343 opt: 2343  Z-score: 2838.7  bits: 533.8 E(32554): 8.5e-152
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQEL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IIPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDEISPSVDDLALSIYPPMC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HLTVRINSAKLVSVLKKALEITKASHVTPQPEDSWIPLLINAIDHCMNRIKELTQSELEL
              310       320       330       340       350       360




360 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:02:34 2016 done: Mon Nov  7 02:02:34 2016
 Total Scan time:  2.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]