FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3658, 164 aa 1>>>pF1KE3658 164 - 164 aa - 164 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6880+/-0.000288; mu= 15.1477+/- 0.018 mean_var=55.6671+/-11.429, 0's: 0 Z-trim(117.2): 25 B-trim: 0 in 0/55 Lambda= 0.171900 statistics sampled from 29056 (29081) to 29056 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.341), width: 16 Scan time: 4.600 The best scores are: opt bits E(85289) NP_004576 (OMIM: 605092) retinoic acid receptor re ( 164) 1095 279.0 2.4e-75 NP_001121675 (OMIM: 613867) HRAS-like suppressor 3 ( 162) 543 142.1 3.9e-34 XP_006718489 (OMIM: 613867) PREDICTED: HRAS-like s ( 162) 543 142.1 3.9e-34 NP_009000 (OMIM: 613867) HRAS-like suppressor 3 [H ( 162) 543 142.1 3.9e-34 XP_011543043 (OMIM: 613867) PREDICTED: HRAS-like s ( 177) 532 139.4 2.7e-33 NP_060348 (OMIM: 613866) HRAS-like suppressor 2 [H ( 162) 527 138.1 6e-33 XP_011543422 (OMIM: 613866) PREDICTED: HRAS-like s ( 195) 520 136.4 2.3e-32 XP_011543055 (OMIM: 611474) PREDICTED: Ca(2+)-inde ( 159) 496 130.4 1.2e-30 XP_016872661 (OMIM: 611474) PREDICTED: Ca(2+)-inde ( 159) 496 130.4 1.2e-30 XP_011543053 (OMIM: 611474) PREDICTED: Ca(2+)-inde ( 268) 497 130.8 1.6e-30 NP_001140201 (OMIM: 611474) Ca(2+)-independent N-a ( 269) 497 130.8 1.6e-30 NP_473449 (OMIM: 611474) Ca(2+)-independent N-acyl ( 279) 497 130.8 1.6e-30 XP_016862412 (OMIM: 606487) PREDICTED: phospholipi ( 168) 450 119.0 3.5e-27 NP_065119 (OMIM: 606487) phospholipid-metabolizing ( 273) 450 119.2 5.2e-27 XP_011511337 (OMIM: 606487) PREDICTED: phospholipi ( 339) 437 116.0 5.7e-26 XP_011511336 (OMIM: 606487) PREDICTED: phospholipi ( 342) 437 116.0 5.8e-26 NP_001140200 (OMIM: 611474) Ca(2+)-independent N-a ( 253) 405 108.0 1.1e-23 XP_011543054 (OMIM: 611474) PREDICTED: Ca(2+)-inde ( 167) 310 84.3 9.8e-17 >>NP_004576 (OMIM: 605092) retinoic acid receptor respon (164 aa) initn: 1095 init1: 1095 opt: 1095 Z-score: 1473.7 bits: 279.0 E(85289): 2.4e-75 Smith-Waterman score: 1095; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164) 10 20 30 40 50 60 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 70 80 90 100 110 120 130 140 150 160 pF1KE3 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA :::::::::::::::::::::::::::::::::::::::::::: NP_004 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA 130 140 150 160 >>NP_001121675 (OMIM: 613867) HRAS-like suppressor 3 [Ho (162 aa) initn: 514 init1: 514 opt: 543 Z-score: 733.9 bits: 142.1 E(85289): 3.9e-34 Smith-Waterman score: 543; 51.2% identity (77.8% similar) in 162 aa overlap (1-161:1-162) 10 20 30 40 50 60 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV : .: :::::::::::: :.:::.:.:::::.::::::: :::..::.:.:...: : NP_001 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL :.: : ::.:. :.:::. : .:.: : ::. :.:.:::.. :...:.::::::..: NP_001 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 70 80 90 100 110 120 130 140 150 160 pF1KE3 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKKATA ::: .: ::. . . ..:: .:. . . : :. . ::. NP_001 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 130 140 150 160 >>XP_006718489 (OMIM: 613867) PREDICTED: HRAS-like suppr (162 aa) initn: 514 init1: 514 opt: 543 Z-score: 733.9 bits: 142.1 E(85289): 3.9e-34 Smith-Waterman score: 543; 51.2% identity (77.8% similar) in 162 aa overlap (1-161:1-162) 10 20 30 40 50 60 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV : .: :::::::::::: :.:::.:.:::::.::::::: :::..::.:.:...: : XP_006 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL :.: : ::.:. :.:::. : .:.: : ::. :.:.:::.. :...:.::::::..: XP_006 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 70 80 90 100 110 120 130 140 150 160 pF1KE3 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKKATA ::: .: ::. . . ..:: .:. . . : :. . ::. XP_006 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 130 140 150 160 >>NP_009000 (OMIM: 613867) HRAS-like suppressor 3 [Homo (162 aa) initn: 514 init1: 514 opt: 543 Z-score: 733.9 bits: 142.1 E(85289): 3.9e-34 Smith-Waterman score: 543; 51.2% identity (77.8% similar) in 162 aa overlap (1-161:1-162) 10 20 30 40 50 60 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV : .: :::::::::::: :.:::.:.:::::.::::::: :::..::.:.:...: : NP_009 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL :.: : ::.:. :.:::. : .:.: : ::. :.:.:::.. :...:.::::::..: NP_009 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 70 80 90 100 110 120 130 140 150 160 pF1KE3 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKKATA ::: .: ::. . . ..:: .:. . . : :. . ::. NP_009 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 130 140 150 160 >>XP_011543043 (OMIM: 613867) PREDICTED: HRAS-like suppr (177 aa) initn: 514 init1: 514 opt: 532 Z-score: 718.6 bits: 139.4 E(85289): 2.7e-33 Smith-Waterman score: 532; 51.9% identity (78.8% similar) in 156 aa overlap (7-161:22-177) 10 20 30 40 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGA :::::::::::: :.:::.:.:::::.::::::: :: XP_011 MKTQRSSWCQLLLHRIGQRIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 GSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMK :..::.:.:...: ::.: : ::.:. :.:::. : .:.: : ::. :.:.:::.. XP_011 GAASVMSALTDKAIVKKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 YSIVSRNCEHFVTQLRYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKKATA :...:.::::::..:::: .: ::. . . ..:: .:. . . : :. . ::. XP_011 YKLTSENCEHFVNELRYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 130 140 150 160 170 >>NP_060348 (OMIM: 613866) HRAS-like suppressor 2 [Homo (162 aa) initn: 540 init1: 526 opt: 527 Z-score: 712.5 bits: 138.1 E(85289): 6e-33 Smith-Waterman score: 527; 55.7% identity (77.9% similar) in 149 aa overlap (1-149:1-147) 10 20 30 40 50 60 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV :: . .:. :::::: :.:: :::.:.:::::.:::: :: :::..::.:.:.:.: : NP_060 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL :.: : :.:: :::::. : .: : : . :.. :.:.:::.. ::..: ::::::..: NP_060 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL 70 80 90 100 110 120 130 140 150 160 pF1KE3 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA ::: :: :: : . ::::. :.:..: NP_060 RYGVSRSDQVTGAVTTVGVAA--GLLAAASLVGILLARSKRERQ 130 140 150 160 >>XP_011543422 (OMIM: 613866) PREDICTED: HRAS-like suppr (195 aa) initn: 524 init1: 510 opt: 520 Z-score: 701.9 bits: 136.4 E(85289): 2.3e-32 Smith-Waterman score: 520; 57.0% identity (78.9% similar) in 142 aa overlap (8-149:41-180) 10 20 30 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLA :. :::::: :.:: :::.:.:::::.::: XP_011 FQFWLQSICIPTLKLFVCLFVYSLKRARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLA 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 PPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAK : :: :::..::.:.:.:.: ::.: : :.:: :::::. : .: : : . :.. :. XP_011 PASEIAGAGAASVLSALTNKAIVKKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAE 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 EMVGQKMKYSIVSRNCEHFVTQLRYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRR :.:::.. ::..: ::::::..:::: :: :: : . ::::. :.:..: XP_011 ELVGQELPYSLTSDNCEHFVNHLRYGVSRSDQVTGAVTTVGVAA--GLLAAASLVGILLA 140 150 160 170 180 160 pF1KE3 YQKKATA XP_011 RSKRERQ 190 >>XP_011543055 (OMIM: 611474) PREDICTED: Ca(2+)-independ (159 aa) initn: 478 init1: 284 opt: 496 Z-score: 671.0 bits: 130.4 E(85289): 1.2e-30 Smith-Waterman score: 496; 54.9% identity (75.4% similar) in 142 aa overlap (8-149:10-147) 10 20 30 40 50 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSA :.:::::::::.::::::.:. : :.::::::: .: :. :..:: : XP_011 MSRSVGKPRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVG--SITSIFSNRA 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 EVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVT :: :::::. :: ..:::.:: : : ::. ::. .:.::.. ..::.. ::::::. XP_011 VVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVN 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 QLRYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA :::: : .:::.: .: : : : : .. : XP_011 GLRYGVPRSQQVEHALME-G-AKAAGAVISAVVDSIKPKPITA 120 130 140 150 >>XP_016872661 (OMIM: 611474) PREDICTED: Ca(2+)-independ (159 aa) initn: 478 init1: 284 opt: 496 Z-score: 671.0 bits: 130.4 E(85289): 1.2e-30 Smith-Waterman score: 496; 54.9% identity (75.4% similar) in 142 aa overlap (8-149:10-147) 10 20 30 40 50 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSA :.:::::::::.::::::.:. : :.::::::: .: :. :..:: : XP_016 MSRSVGKPRPRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVG--SITSIFSNRA 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 EVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVT :: :::::. :: ..:::.:: : : ::. ::. .:.::.. ..::.. ::::::. XP_016 VVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVN 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 QLRYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA :::: : .:::.: .: : : : : .. : XP_016 GLRYGVPRSQQVEHALME-G-AKAAGAVISAVVDSIKPKPITA 120 130 140 150 >>XP_011543053 (OMIM: 611474) PREDICTED: Ca(2+)-independ (268 aa) initn: 479 init1: 284 opt: 497 Z-score: 669.1 bits: 130.8 E(85289): 1.6e-30 Smith-Waterman score: 497; 53.4% identity (74.3% similar) in 148 aa overlap (2-149:113-256) 10 20 30 pF1KE3 MASPHQEPKPGDLIEIFRLGYEHWALYIGDG : . .:.:::::::::.::::::.:. : XP_011 VVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYVEDD 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE3 YVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEV :.::::::: .:: . :..:: : :: :::::. :: ..:::.:: : : ::. XP_011 CVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDK 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE3 IISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRCKQVEKAKVEVGVATALGILVVAGC ::. .:.::.. ..::.. ::::::. :::: : .:::.: .: : : : : .. : XP_011 IIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALME-G-AKAAGAVISAVV 210 220 230 240 250 160 pF1KE3 SFAIRRYQKKATA XP_011 DSIKPKPITA 260 164 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:03:02 2016 done: Mon Nov 7 02:03:02 2016 Total Scan time: 4.600 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]