FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1487, 165 aa 1>>>pF1KE1487 165 - 165 aa - 165 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8108+/-0.000317; mu= 14.9222+/- 0.020 mean_var=61.1324+/-12.075, 0's: 0 Z-trim(116.6): 44 B-trim: 725 in 2/51 Lambda= 0.164036 statistics sampled from 27904 (27948) to 27904 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.328), width: 16 Scan time: 5.140 The best scores are: opt bits E(85289) NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 1073 261.8 3.7e-70 NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11 NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11 NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11 NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11 NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 251 67.3 1.7e-11 NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 251 67.3 1.7e-11 NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 251 67.7 4.1e-11 XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 195 54.0 1.5e-07 NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 188 52.3 3.5e-07 NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 183 51.1 7.7e-07 NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07 NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07 NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07 NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07 NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 183 51.1 7.7e-07 XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07 XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07 XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07 XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 183 51.1 9e-07 NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 170 48.0 7.6e-06 NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 170 48.0 7.6e-06 NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 170 48.0 7.6e-06 NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 171 48.6 1.3e-05 NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 171 48.6 1.6e-05 NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 148 42.9 0.00029 NP_001988 (OMIM: 134690) ubiquitin-like protein fu ( 133) 143 41.6 0.00056 NP_055050 (OMIM: 312070) ubiquitin-like protein 4A ( 157) 127 37.9 0.0088 >>NP_005092 (OMIM: 147571,616126) ubiquitin-like protein (165 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1380.5 bits: 261.8 E(85289): 3.7e-70 Smith-Waterman score: 1073; 99.4% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: NP_005 ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 70 80 90 100 110 120 130 140 150 160 pF1KE1 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS ::::::::::::::::::::::::::::::::::::::::::::: NP_005 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS 130 140 150 160 >>NP_001268647 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_001 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_001268648 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_001 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_001268649 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_001 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_001268646 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_001 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_061828 (OMIM: 119540,191339) polyubiquitin-B precur (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_061 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_061 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_061 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_061 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_061 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_061 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_061 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_001268645 (OMIM: 119540,191339) polyubiquitin-B pre (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 327.2 bits: 67.3 E(85289): 1.7e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_001 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_001 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_001 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_001 LRLRGGC >-- initn: 149 init1: 149 opt: 161 Z-score: 212.1 bits: 46.0 E(85289): 4.5e-05 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_001 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_001 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens (685 aa) initn: 157 init1: 157 opt: 251 Z-score: 320.5 bits: 67.7 E(85289): 4.1e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_066 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_066 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_066 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_066 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 230 240 250 260 270 280 >-- initn: 226 init1: 157 opt: 251 Z-score: 320.5 bits: 67.7 E(85289): 4.1e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:380-532) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. NP_066 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 350 360 370 380 390 400 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : NP_066 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 410 420 430 440 450 460 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . NP_066 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 470 480 490 500 510 520 160 pF1KE1 LRLRGGGTEPGGRS :::::: NP_066 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 530 540 550 560 570 580 >-- initn: 216 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05 Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:229-304) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 200 210 220 230 240 250 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . :::::: NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 260 270 280 290 300 310 NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 320 330 340 350 360 370 >-- initn: 224 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05 Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:533-608) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 510 520 530 540 550 560 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . :::::: NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 570 580 590 600 610 620 NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 630 640 650 660 670 680 >-- initn: 157 init1: 157 opt: 169 Z-score: 215.6 bits: 48.3 E(85289): 2.9e-05 Smith-Waterman score: 169; 36.8% identity (68.4% similar) in 76 aa overlap (82-157:609-684) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 580 590 600 610 620 630 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . :::::: NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 640 650 660 670 680 >-- initn: 149 init1: 149 opt: 161 Z-score: 205.4 bits: 46.4 E(85289): 0.00011 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:305-379) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_066 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 280 290 300 310 320 330 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 340 350 360 370 380 390 NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 400 410 420 430 440 450 >-- initn: 149 init1: 149 opt: 161 Z-score: 205.4 bits: 46.4 E(85289): 0.00011 Smith-Waterman score: 161; 36.0% identity (68.0% similar) in 75 aa overlap (82-156:1-75) 60 70 80 90 100 110 pF1KE1 VALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV ..:.:.. :.. : ::. ..:. ..: .. NP_066 MQIFVKTLTGKTITLEVEPSDTIENVKAKI 10 20 30 120 130 140 150 160 pF1KE1 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS . ::. : : : :: ::: :..:... ::. . ::::: NP_066 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 40 50 60 70 80 90 NP_066 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 100 110 120 130 140 150 >>XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-60S r (203 aa) initn: 219 init1: 157 opt: 195 Z-score: 256.3 bits: 54.0 E(85289): 1.5e-07 Smith-Waterman score: 195; 33.1% identity (60.6% similar) in 127 aa overlap (41-164:8-130) 20 30 40 50 60 pF1KE1 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG---P : .:::. .. : :: . . : . XP_016 MCVVGDGFPSRLAAG-AACADQDLAAVEEGGTAFRED 10 20 30 70 80 90 100 110 120 pF1KE1 GSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE ::. .. : ..:.:.. :.. : ::. ..:. ..: ... ::. : : : XP_016 GSSKMM---PKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 40 50 60 70 80 90 130 140 150 160 pF1KE1 GKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS :: ::: :..:... ::. . :::::: ::. : XP_016 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKYVCSDAWG 100 110 120 130 140 150 XP_016 AVGAAGVGVCPHPPLLSLCRCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 160 170 180 190 200 >>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa) initn: 219 init1: 157 opt: 188 Z-score: 249.9 bits: 52.3 E(85289): 3.5e-07 Smith-Waterman score: 188; 37.2% identity (66.3% similar) in 86 aa overlap (79-164:5-90) 50 60 70 80 90 100 pF1KE1 PSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLK : ..:.:.. :.. : ::. ..:. ..: NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVK 10 20 30 110 120 130 140 150 160 pF1KE1 QQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS ... ::. : : : :: ::: :..:... ::. . :::::: ::. : NP_001 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQ 40 50 60 70 80 90 NP_001 KYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 100 110 120 130 165 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:03:29 2016 done: Mon Nov 7 02:03:29 2016 Total Scan time: 5.140 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]