FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1487, 165 aa 1>>>pF1KE1487 165 - 165 aa - 165 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3177+/-0.000677; mu= 11.8761+/- 0.041 mean_var=61.4223+/-12.095, 0's: 0 Z-trim(109.5): 22 B-trim: 0 in 0/50 Lambda= 0.163648 statistics sampled from 10888 (10906) to 10888 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.335), width: 16 Scan time: 1.980 The best scores are: opt bits E(32554) CCDS6.1 ISG15 gene_id:9636|Hs108|chr1 ( 165) 1073 261.3 2e-70 CCDS11177.1 UBB gene_id:7314|Hs108|chr17 ( 229) 251 67.2 7e-12 CCDS9260.1 UBC gene_id:7316|Hs108|chr12 ( 685) 251 67.5 1.8e-11 >>CCDS6.1 ISG15 gene_id:9636|Hs108|chr1 (165 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1377.8 bits: 261.3 E(32554): 2e-70 Smith-Waterman score: 1073; 99.4% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS6. MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ASQGLGPGSTVLLVVDKCDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: CCDS6. ASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 70 80 90 100 110 120 130 140 150 160 pF1KE1 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS ::::::::::::::::::::::::::::::::::::::::::::: CCDS6. LFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGTEPGGRS 130 140 150 160 >>CCDS11177.1 UBB gene_id:7314|Hs108|chr17 (229 aa) initn: 226 init1: 157 opt: 251 Z-score: 326.8 bits: 67.2 E(32554): 7e-12 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. CCDS11 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : CCDS11 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . CCDS11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: CCDS11 LRLRGGC >>CCDS9260.1 UBC gene_id:7316|Hs108|chr12 (685 aa) initn: 157 init1: 157 opt: 251 Z-score: 319.3 bits: 67.5 E(32554): 1.8e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:76-228) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. CCDS92 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : CCDS92 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . CCDS92 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 170 180 190 200 210 220 160 pF1KE1 LRLRGGGTEPGGRS :::::: CCDS92 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 230 240 250 260 270 280 >-- initn: 226 init1: 157 opt: 251 Z-score: 319.3 bits: 67.5 E(32554): 1.8e-11 Smith-Waterman score: 251; 32.7% identity (62.8% similar) in 156 aa overlap (2-157:380-532) 10 20 30 pF1KE1 MGWDLTVKMLAGNEFQVSLSSSMSVSELKAQ : .. :: :.:. . . . : .. ..::. CCDS92 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 350 360 370 380 390 400 40 50 60 70 80 90 pF1KE1 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLNILVRNNKG : .: :. :::: .: :.: :.. .. ::. ::. . ..:.:.. : CCDS92 IQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTG 410 420 430 440 450 460 100 110 120 130 140 150 pF1KE1 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN .. : ::. ..:. ..: ... ::. : : : :: ::: :..:... ::. . CCDS92 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 470 480 490 500 510 520 160 pF1KE1 LRLRGGGTEPGGRS :::::: CCDS92 LRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 530 540 550 560 570 580 165 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:03:28 2016 done: Mon Nov 7 02:03:28 2016 Total Scan time: 1.980 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]