FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4317, 323 aa 1>>>pF1KE4317 323 - 323 aa - 323 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2628+/-0.00071; mu= 16.4734+/- 0.043 mean_var=74.9777+/-14.263, 0's: 0 Z-trim(110.8): 31 B-trim: 43 in 1/52 Lambda= 0.148118 statistics sampled from 11834 (11863) to 11834 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.364), width: 16 Scan time: 2.620 The best scores are: opt bits E(32554) CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1 ( 323) 2176 473.9 7.3e-134 CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2 ( 314) 1013 225.4 4.6e-59 >>CCDS609.1 TACSTD2 gene_id:4070|Hs108|chr1 (323 aa) initn: 2176 init1: 2176 opt: 2176 Z-score: 2516.7 bits: 473.9 E(32554): 7.3e-134 Smith-Waterman score: 2176; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323) 10 20 30 40 50 60 pF1KE4 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GLDLRVRGEPLQVERTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVITNR 250 260 270 280 290 300 310 320 pF1KE4 RKSGKYKKVEIKELGELRKEPSL ::::::::::::::::::::::: CCDS60 RKSGKYKKVEIKELGELRKEPSL 310 320 >>CCDS1833.1 EPCAM gene_id:4072|Hs108|chr2 (314 aa) initn: 923 init1: 416 opt: 1013 Z-score: 1173.8 bits: 225.4 E(32554): 4.6e-59 Smith-Waterman score: 1013; 49.7% identity (78.8% similar) in 316 aa overlap (7-320:1-311) 10 20 30 40 50 60 pF1KE4 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS .::: . : . ::. ::.. .:::..:.: . :..: . . .::: ..:. CCDS18 MAPPQV-LAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGA 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN .: :: :..:::..::.:.. : .: ..: : :: .:::::::::: : :::.::: CCDS18 QNTVICSKLAAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCN 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF ::.:::::..::::::: : . :.: :::. :.:.:.:. .. ..: . :.. . CCDS18 GTSMCWCVNTAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEI 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE4 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG ::.: :::.... ::. .: :.: ::.:::. .::::.:.:::::.:.::::::... CCDS18 TTRYQLDPKFITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKK 180 190 200 210 220 230 250 260 270 280 290 pF1KE4 GLDLRVRGEPLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVIT .:: : :: :... .:::::.:: :.:::. : ::.::::::::.:.:::..::::. CCDS18 -MDLTVNGEQLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVIS 240 250 260 270 280 300 310 320 pF1KE4 NRRKSGKYKKVEIKELGELRKEPSL ... .::.:.::::.::...: CCDS18 RKKRMAKYEKAEIKEMGEMHRELNA 290 300 310 323 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:13:00 2016 done: Sat Nov 5 23:13:01 2016 Total Scan time: 2.620 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]