Result of FASTA (ccds) for
pFN21AE5213
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5213, 244 aa
1>>>pF1KE5213 244 - 244 aa - 244 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6401+/-0.000824; mu= 11.8702+/- 0.049
mean_var=57.0939+/-11.479, 0's: 0 Z-trim(106.4): 22 B-trim: 0 in 0/49
Lambda= 0.169738
statistics sampled from 8927 (8940) to 8927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.275), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 ( 244) 1623 405.5 1.7e-113
CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 ( 276) 462 121.2 7.2e-28
CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 ( 265) 457 120.0 1.6e-27
CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 260) 436 114.8 5.6e-26
CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 ( 261) 432 113.9 1.1e-25
CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 ( 271) 415 109.7 2.1e-24
CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 ( 466) 406 107.5 1.6e-23
>>CCDS11093.1 CTDNEP1 gene_id:23399|Hs108|chr17 (244 aa)
initn: 1623 init1: 1623 opt: 1623 Z-score: 2151.3 bits: 405.5 E(32554): 1.7e-113
Smith-Waterman score: 1623; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE5 MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQ
190 200 210 220 230 240
pF1KE5 HRLW
::::
CCDS11 HRLW
>>CCDS33734.1 CTDSPL gene_id:10217|Hs108|chr3 (276 aa)
initn: 443 init1: 237 opt: 462 Z-score: 613.8 bits: 121.2 E(32554): 7.2e-28
Smith-Waterman score: 501; 41.4% identity (69.7% similar) in 198 aa overlap (45-236:84-272)
20 30 40 50 60
pF1KE5 AFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPL-SPVSRNRLAQVK-----RKILVLDL
..:. :: .. : .: .: .:.::
CCDS33 NVEAPPPSSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDL
60 70 80 90 100 110
70 80 90 100 110 120
pF1KE5 DETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELV
::::.:: . .: . :::. : :: . .: :::::: ::. ..: .: :
CCDS33 DETLVHS--------SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECV
120 130 140 150 160
130 140 150 160 170 180
pF1KE5 VFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNS
.::::. :.. ::: :: .... : .:. :... :.:.:::: . .::...:.:::
CCDS33 LFTASLAKYADPVADLLDR-WGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNS
170 180 190 200 210 220
190 200 210 220 230 240
pF1KE5 PGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
:..: ::.::.:..:::.: .:: ::.:.:....: :: :.: :
CCDS33 PASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
230 240 250 260 270
>>CCDS33735.1 CTDSPL gene_id:10217|Hs108|chr3 (265 aa)
initn: 443 init1: 237 opt: 457 Z-score: 607.5 bits: 120.0 E(32554): 1.6e-27
Smith-Waterman score: 494; 43.8% identity (72.2% similar) in 176 aa overlap (61-236:95-261)
40 50 60 70 80 90
pF1KE5 QIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTP
.: .:.::::::.:: . .: .
CCDS33 VLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS--------SFKPISN
70 80 90 100 110
100 110 120 130 140 150
pF1KE5 PDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRS
:::. : :: . .: :::::: ::. ..: .: :.::::. :.. ::: :: .
CCDS33 ADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDR-WG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE5 ILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPS
... : .:. :... :.:.:::: . .::...:.::::..: ::.::.:..:::.: .
CCDS33 VFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMT
180 190 200 210 220 230
220 230 240
pF1KE5 DTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
:: ::.:.:....: :: :.: :
CCDS33 DTELLDLIPFFEGLSREDDVYSMLHRLCNR
240 250 260
>>CCDS56166.1 CTDSP1 gene_id:58190|Hs108|chr2 (260 aa)
initn: 476 init1: 283 opt: 436 Z-score: 579.9 bits: 114.8 E(32554): 5.6e-26
Smith-Waterman score: 478; 43.5% identity (68.4% similar) in 193 aa overlap (46-234:70-253)
20 30 40 50 60 70
pF1KE5 FAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSR---NRLAQVKRKI-LVLDLDET
.: .::. . :: . :: .:.:::::
CCDS56 HSLFCCVCRDDGEALPAHSGAPLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDET
40 50 60 70 80 90
80 90 100 110 120 130
pF1KE5 LIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFT
:.:: . .: . :::. : :: . .: :::::: ::. ... .: :.::
CCDS56 LVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFT
100 110 120 130 140 150
140 150 160 170 180 190
pF1KE5 ASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGA
::. :.. ::: ::. . .. : .:. :... :.:.:::: . :: ..::::::..
CCDS56 ASLAKYADPVADLLDK-WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPAS
160 170 180 190 200 210
200 210 220 230 240
pF1KE5 YRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
: :::::.:. :::.. ::: : .:::... : . :: :::
CCDS56 YVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
220 230 240 250 260
>>CCDS2416.1 CTDSP1 gene_id:58190|Hs108|chr2 (261 aa)
initn: 476 init1: 283 opt: 432 Z-score: 574.6 bits: 113.9 E(32554): 1.1e-25
Smith-Waterman score: 474; 45.3% identity (69.8% similar) in 179 aa overlap (57-234:85-254)
30 40 50 60 70 80
pF1KE5 LLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKI-LVLDLDETLIHSHHDGVLRPTV
:: . :: .:.::::::.:: .
CCDS24 PAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHS--------SF
60 70 80 90 100
90 100 110 120 130 140
pF1KE5 RPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKL
.: . :::. : :: . .: :::::: ::. ... .: :.::::. :.. ::: :
CCDS24 KPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLL
110 120 130 140 150 160
150 160 170 180 190 200
pF1KE5 DNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSW
:. . .. : .:. :... :.:.:::: . :: ..::::::..: :::::.:. ::
CCDS24 DK-WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASW
170 180 190 200 210 220
210 220 230 240
pF1KE5 FSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
:.. ::: : .:::... : . :: :::
CCDS24 FDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS
230 240 250 260
>>CCDS41801.1 CTDSP2 gene_id:10106|Hs108|chr12 (271 aa)
initn: 402 init1: 228 opt: 415 Z-score: 551.8 bits: 109.7 E(32554): 2.1e-24
Smith-Waterman score: 454; 40.9% identity (69.9% similar) in 176 aa overlap (61-236:101-267)
40 50 60 70 80 90
pF1KE5 QIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTP
: .:.::::::.:: . .: .
CCDS41 KSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLVHS--------SFKPINN
80 90 100 110 120
100 110 120 130 140 150
pF1KE5 PDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRS
:::. . :. . .: :::.:: ::. ... .: :.::::. :.. :.: :: .
CCDS41 ADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRC-G
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 ILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPS
... : .:. :... : :.:::: . :: . .::::::..: ::.::.:..:::.: .
CCDS41 VFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMA
190 200 210 220 230 240
220 230 240
pF1KE5 DTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW
:: ::::.:... : . :: . :..
CCDS41 DTELLNLIPIFEELSGAEDVYTSLGQLRAP
250 260 270
>>CCDS10110.1 CTDSPL2 gene_id:51496|Hs108|chr15 (466 aa)
initn: 426 init1: 354 opt: 406 Z-score: 535.8 bits: 107.5 E(32554): 1.6e-23
Smith-Waterman score: 424; 34.7% identity (63.6% similar) in 225 aa overlap (21-243:252-462)
10 20 30 40
pF1KE5 MMRTQCLLGLRTFVAFAAKLWSFF-IYLLRRQIRTVIQYQTVRYDILPLS
: : : . ... . . : : :::.
CCDS10 VNRDIPPLTAPVTPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPALPLK
230 240 250 260 270 280
50 60 70 80 90 100
pF1KE5 PVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVH
: ... :::::::::.: . . .. : : .. :. . .:.
CCDS10 TRSTPEFS------LVLDLDETLVHCSLNELEDAAL---TFPVLFQDVI-----YQVYVR
290 300 310 320
110 120 130 140 150 160
pF1KE5 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI
:: ::: .:: ::...:::: ..:.. . . :: .......: .:.::. :.::
CCDS10 LRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYI
330 340 350 360 370 380
170 180 190 200 210 220
pF1KE5 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDAL-RFTA
:::... :::. .:.:::: :. . .:.:::.::: : .:. ::.:.:.:. : ...
CCDS10 KDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELNE
390 400 410 420 430 440
230 240
pF1KE5 DVRSVLSRNLHQHRLW
::: . .. : :
CCDS10 DVRPHIRDRFRLHDLLPPD
450 460
244 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:33:52 2016 done: Mon Nov 7 22:33:53 2016
Total Scan time: 1.690 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]