FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6216, 193 aa
  1>>>pF1KE6216 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9931+/-0.000306; mu= 15.9078+/- 0.019
 mean_var=74.2309+/-14.842, 0's: 0 Z-trim(118.7): 11  B-trim: 793 in 1/51
 Lambda= 0.148861
 statistics sampled from 31899 (31909) to 31899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.374), width:  16
 Scan time:  4.730

The best scores are:                                      opt bits E(85289)
NP_000396 (OMIM: 272750,613109) ganglioside GM2 ac ( 193) 1307 289.1   3e-78
NP_001161079 (OMIM: 272750,613109) ganglioside GM2 ( 186)  971 216.9 1.6e-56


>>NP_000396 (OMIM: 272750,613109) ganglioside GM2 activa  (193 aa)
 initn: 1307 init1: 1307 opt: 1307  Z-score: 1525.7  bits: 289.1 E(85289): 3e-78
Smith-Waterman score: 1307; 99.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE6 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_000 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKR
              130       140       150       160       170       180

              190   
pF1KE6 LGCIKIAASLKGI
       :::::::::::::
NP_000 LGCIKIAASLKGI
              190   

>>NP_001161079 (OMIM: 272750,613109) ganglioside GM2 act  (186 aa)
 initn: 981 init1: 967 opt: 971  Z-score: 1135.9  bits: 216.9 E(85289): 1.6e-56
Smith-Waterman score: 971; 94.0% identity (98.0% similar) in 149 aa overlap (1-149:1-148)

               10        20        30        40        50        60
pF1KE6 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKR
       ::::::::::::::::::::. ..  ::.                               
NP_001 TGEPCPEPLRTYGLPCHCPFS-SVLCLPRPNSHSLPPFNPLSTVSPLPSLKIILYHLHFR
              130       140        150       160       170         




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:10:07 2016 done: Tue Nov  8 11:10:07 2016
 Total Scan time:  4.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]