FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6216, 193 aa
  1>>>pF1KE6216 193 - 193 aa - 193 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0118+/-0.000642; mu= 15.7056+/- 0.039
 mean_var=70.6651+/-13.886, 0's: 0 Z-trim(111.7): 9  B-trim: 68 in 1/52
 Lambda= 0.152571
 statistics sampled from 12573 (12577) to 12573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.386), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS4313.1 GM2A gene_id:2760|Hs108|chr5            ( 193) 1307 295.8 1.1e-80


>>CCDS4313.1 GM2A gene_id:2760|Hs108|chr5                 (193 aa)
 initn: 1307 init1: 1307 opt: 1307  Z-score: 1562.2  bits: 295.8 E(32554): 1.1e-80
Smith-Waterman score: 1307; 99.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KE6 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS43 MQSLMQAPLLIALGLLLAAPAQAHLKKPSQLSSFSWDNCDEGKDPAVIRSLTLEPDPIIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 TGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKR
              130       140       150       160       170       180

              190   
pF1KE6 LGCIKIAASLKGI
       :::::::::::::
CCDS43 LGCIKIAASLKGI
              190   




193 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:10:06 2016 done: Tue Nov  8 11:10:06 2016
 Total Scan time:  1.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]