FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1307, 472 aa 1>>>pF1KE1307 472 - 472 aa - 472 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0880+/-0.000349; mu= 19.1396+/- 0.022 mean_var=69.8777+/-13.950, 0's: 0 Z-trim(115.4): 10 B-trim: 0 in 0/53 Lambda= 0.153428 statistics sampled from 25837 (25846) to 25837 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.303), width: 16 Scan time: 7.410 The best scores are: opt bits E(85289) NP_003935 (OMIM: 604188) selenium-binding protein ( 472) 3284 736.1 5e-212 NP_001245218 (OMIM: 604188) selenium-binding prote ( 514) 3277 734.5 1.6e-211 NP_001245217 (OMIM: 604188) selenium-binding prote ( 410) 2475 556.9 3.6e-158 XP_016858246 (OMIM: 604188) PREDICTED: selenium-bi ( 283) 1106 253.8 4.5e-67 >>NP_003935 (OMIM: 604188) selenium-binding protein 1 is (472 aa) initn: 3284 init1: 3284 opt: 3284 Z-score: 3927.5 bits: 736.1 E(85289): 5e-212 Smith-Waterman score: 3284; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472) 10 20 30 40 50 60 pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE 370 380 390 400 410 420 430 440 450 460 470 pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 430 440 450 460 470 >>NP_001245218 (OMIM: 604188) selenium-binding protein 1 (514 aa) initn: 3277 init1: 3277 opt: 3277 Z-score: 3918.6 bits: 734.5 E(85289): 1.6e-211 Smith-Waterman score: 3277; 100.0% identity (100.0% similar) in 471 aa overlap (2-472:44-514) 10 20 30 pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPC :::::::::::::::::::::::::::::: NP_001 WPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVYLPC 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE1 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE1 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR 200 210 220 230 240 250 220 230 240 250 260 270 pF1KE1 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSLKDGLIPLEIRFLHNPDAAQGFVGCALS 260 270 280 290 300 310 280 290 300 310 320 330 pF1KE1 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGD 320 330 340 350 360 370 340 350 360 370 380 390 pF1KE1 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQ 380 390 400 410 420 430 400 410 420 430 440 450 pF1KE1 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPL 440 450 460 470 480 490 460 470 pF1KE1 GPALAHELRYPGGDCSSDIWI ::::::::::::::::::::: NP_001 GPALAHELRYPGGDCSSDIWI 500 510 >>NP_001245217 (OMIM: 604188) selenium-binding protein 1 (410 aa) initn: 2475 init1: 2475 opt: 2475 Z-score: 2960.6 bits: 556.9 E(85289): 3.6e-158 Smith-Waterman score: 2724; 86.9% identity (86.9% similar) in 472 aa overlap (1-472:1-410) 10 20 30 40 50 60 pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 HRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHK NP_001 ------------------------------------------------------------ 130 140 150 160 170 180 pF1KE1 VIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 --EPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERP 70 80 90 100 110 190 200 210 220 230 240 pF1KE1 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQ 120 130 140 150 160 170 250 260 270 280 290 300 pF1KE1 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLSLKDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKG 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE1 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGP 240 250 260 270 280 290 370 380 390 400 410 420 pF1KE1 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIRE 300 310 320 330 340 350 430 440 450 460 470 pF1KE1 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 360 370 380 390 400 410 >>XP_016858246 (OMIM: 604188) PREDICTED: selenium-bindin (283 aa) initn: 1106 init1: 1106 opt: 1106 Z-score: 1325.1 bits: 253.8 E(85289): 4.5e-67 Smith-Waterman score: 1106; 100.0% identity (100.0% similar) in 159 aa overlap (2-160:44-202) 10 20 30 pF1KE1 MATKCGNCGPGYSTPLEAMKGPREEIVYLPC :::::::::::::::::::::::::::::: XP_016 WPAGMCAAERAEGAFTLQSVAQPMRPIASTATKCGNCGPGYSTPLEAMKGPREEIVYLPC 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE1 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSR 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISS 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE1 LGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLR ::::::::: XP_016 LGDVKGNGKETEFHHVGQADPELLTSSDPPASASQRAGITGMSHSSPSPGCLNLRNWQIQ 200 210 220 230 240 250 472 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:04:47 2016 done: Mon Nov 7 02:04:48 2016 Total Scan time: 7.410 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]