FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4340, 351 aa 1>>>pF1KE4340 351 - 351 aa - 351 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9104+/-0.000459; mu= 18.1146+/- 0.029 mean_var=58.1619+/-11.494, 0's: 0 Z-trim(108.1): 44 B-trim: 0 in 0/53 Lambda= 0.168173 statistics sampled from 16181 (16205) to 16181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.19), width: 16 Scan time: 7.420 The best scores are: opt bits E(85289) NP_004682 (OMIM: 607028) V-type proton ATPase subu ( 351) 2332 574.6 1.2e-163 XP_011521746 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127 XP_011521747 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127 XP_011521748 (OMIM: 607028) PREDICTED: V-type prot ( 274) 1835 453.9 1.9e-127 >>NP_004682 (OMIM: 607028) V-type proton ATPase subunit (351 aa) initn: 2332 init1: 2332 opt: 2332 Z-score: 3059.3 bits: 574.6 E(85289): 1.2e-163 Smith-Waterman score: 2332; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351) 10 20 30 40 50 60 pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF 310 320 330 340 350 >>XP_011521746 (OMIM: 607028) PREDICTED: V-type proton A (274 aa) initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127 Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274) 50 60 70 80 90 100 pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID :::::::::::::::::::::::::::::: XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID 10 20 30 110 120 130 140 150 160 pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY 220 230 240 250 260 270 350 pF1KE4 IPIF :::: XP_011 IPIF >>XP_011521747 (OMIM: 607028) PREDICTED: V-type proton A (274 aa) initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127 Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274) 50 60 70 80 90 100 pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID :::::::::::::::::::::::::::::: XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID 10 20 30 110 120 130 140 150 160 pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY 220 230 240 250 260 270 350 pF1KE4 IPIF :::: XP_011 IPIF >>XP_011521748 (OMIM: 607028) PREDICTED: V-type proton A (274 aa) initn: 1835 init1: 1835 opt: 1835 Z-score: 2409.2 bits: 453.9 E(85289): 1.9e-127 Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 274 aa overlap (78-351:1-274) 50 60 70 80 90 100 pF1KE4 HLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMID :::::::::::::::::::::::::::::: XP_011 MVVEFRHMRNHAYEPLASFLDFITYSYMID 10 20 30 110 120 130 140 150 160 pF1KE4 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDC 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE4 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINS 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE4 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGD 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE4 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNY 220 230 240 250 260 270 350 pF1KE4 IPIF :::: XP_011 IPIF 351 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:11:31 2016 done: Sun Nov 6 02:11:32 2016 Total Scan time: 7.420 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]