FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4340, 351 aa 1>>>pF1KE4340 351 - 351 aa - 351 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2826+/-0.00102; mu= 15.7471+/- 0.061 mean_var=54.4347+/-10.844, 0's: 0 Z-trim(102.0): 26 B-trim: 28 in 1/47 Lambda= 0.173835 statistics sampled from 6771 (6776) to 6771 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.208), width: 16 Scan time: 2.480 The best scores are: opt bits E(32554) CCDS10838.1 ATP6V0D1 gene_id:9114|Hs108|chr16 ( 351) 2332 593.1 1.1e-169 CCDS6241.1 ATP6V0D2 gene_id:245972|Hs108|chr8 ( 350) 1625 415.8 2.7e-116 >>CCDS10838.1 ATP6V0D1 gene_id:9114|Hs108|chr16 (351 aa) initn: 2332 init1: 2332 opt: 2332 Z-score: 3159.7 bits: 593.1 E(32554): 1.1e-169 Smith-Waterman score: 2332; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351) 10 20 30 40 50 60 pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF 310 320 330 340 350 >>CCDS6241.1 ATP6V0D2 gene_id:245972|Hs108|chr8 (350 aa) initn: 1622 init1: 1304 opt: 1625 Z-score: 2201.4 bits: 415.8 E(32554): 2.7e-116 Smith-Waterman score: 1625; 68.2% identity (89.6% similar) in 346 aa overlap (6-351:6-350) 10 20 30 40 50 60 pF1KE4 MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLAN :::::::.::::::::: ::..:.: ::.::::::::::::.:::.::::::::: CCDS62 MLEGAELYFNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLAN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQR ...::::: :: ...... ::...:::. :::..:: ..: ::::::::::..:.:... CCDS62 HTNPLTVSKIDTEMRKRLCGEFEYFRNHSLEPLSTFLTYMTCSYMIDNVILLMNGALQKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEI :. :.. :::::: : .:::::::.::..:.::::..:::: :::::.::. :::.:::. CCDS62 SVKEILGKCHPLGRFTEMEAVNIAETPSDLFNAILIETPLAPFFQDCMSENALDELNIEL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL .:: :::.:::.::::: : .::..:::::::::::::::::.:::::::::::: : CCDS62 LRNKLYKSYLEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNSFGTELSKEDRETL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK .: :.:::::: ::.:.:..:.:::::.: :: :::..:.. : ::::: :.:.::. CCDS62 YPTFGKLYPEGLRLLAQAEDFDQMKNVADHYGVYKPLFEAVGGS-GGKTLEDVFYEREVQ 250 260 270 280 290 310 320 330 340 350 pF1KE4 LNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF .: ::: :::.:::::.::::::: ::::::::::.::::.::..::::. CCDS62 MNVLAFNRQFHYGVFYAYVKLKEQEIRNIVWIAECISQRHRTKINSYIPIL 300 310 320 330 340 350 351 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:11:30 2016 done: Sun Nov 6 02:11:31 2016 Total Scan time: 2.480 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]