FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7903, 107 aa 1>>>pF1KB7903 107 - 107 aa - 107 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3470+/-0.000243; mu= -2.1622+/- 0.015 mean_var=178.7186+/-35.427, 0's: 0 Z-trim(126.5): 17 B-trim: 81 in 1/60 Lambda= 0.095938 statistics sampled from 52759 (52778) to 52759 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.88), E-opt: 0.2 (0.619), width: 16 Scan time: 5.440 The best scores are: opt bits E(85289) NP_665906 (OMIM: 125853,600701) high mobility grou ( 107) 704 107.3 4.7e-24 NP_001306007 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24 NP_001306008 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24 NP_665908 (OMIM: 125853,600701) high mobility grou ( 107) 704 107.3 4.7e-24 NP_001306010 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24 NP_001306011 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24 NP_001306009 (OMIM: 125853,600701) high mobility g ( 106) 686 104.9 2.6e-23 NP_665910 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12 NP_665909 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12 NP_665912 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12 NP_001306006 (OMIM: 125853,600701) high mobility g ( 96) 417 67.6 3.9e-12 NP_002122 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12 NP_003474 (OMIM: 150699,600698) high mobility grou ( 109) 211 39.1 0.0017 NP_001317119 (OMIM: 150699,600698) high mobility g ( 90) 205 38.2 0.0025 NP_001287847 (OMIM: 150699,600698) high mobility g ( 118) 201 37.8 0.0046 NP_003475 (OMIM: 150699,600698) high mobility grou ( 106) 200 37.6 0.0047 NP_001287848 (OMIM: 150699,600698) high mobility g ( 147) 200 37.7 0.0061 >>NP_665906 (OMIM: 125853,600701) high mobility group pr (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_001306007 (OMIM: 125853,600701) high mobility group (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_001306008 (OMIM: 125853,600701) high mobility group (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_665908 (OMIM: 125853,600701) high mobility group pr (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_001306010 (OMIM: 125853,600701) high mobility group (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_001306011 (OMIM: 125853,600701) high mobility group (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>NP_001306009 (OMIM: 125853,600701) high mobility group (106 aa) initn: 406 init1: 406 opt: 686 Z-score: 539.4 bits: 104.9 E(85289): 2.6e-23 Smith-Waterman score: 686; 99.1% identity (99.1% similar) in 107 aa overlap (1-107:1-106) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQ-EPSEVPTPKRPRGR 10 20 30 40 50 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 60 70 80 90 100 >>NP_665910 (OMIM: 125853,600701) high mobility group pr (96 aa) initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12 Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::: ::::::::::::::: NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 10 20 30 40 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 50 60 70 80 90 >>NP_665909 (OMIM: 125853,600701) high mobility group pr (96 aa) initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12 Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::: ::::::::::::::: NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 10 20 30 40 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 50 60 70 80 90 >>NP_665912 (OMIM: 125853,600701) high mobility group pr (96 aa) initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12 Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::: ::::::::::::::: NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 10 20 30 40 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 50 60 70 80 90 107 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:06:31 2016 done: Mon Nov 7 02:06:32 2016 Total Scan time: 5.440 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]