FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7903, 107 aa 1>>>pF1KB7903 107 - 107 aa - 107 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4966+/-0.000619; mu= 3.2101+/- 0.038 mean_var=174.5326+/-34.515, 0's: 0 Z-trim(118.6): 8 B-trim: 10 in 1/55 Lambda= 0.097081 statistics sampled from 19600 (19607) to 19600 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.602), width: 16 Scan time: 1.640 The best scores are: opt bits E(32554) CCDS4789.1 HMGA1 gene_id:3159|Hs108|chr6 ( 107) 704 108.3 9.4e-25 CCDS4788.1 HMGA1 gene_id:3159|Hs108|chr6 ( 96) 417 68.1 1.1e-12 >>CCDS4789.1 HMGA1 gene_id:3159|Hs108|chr6 (107 aa) initn: 704 init1: 704 opt: 704 Z-score: 557.9 bits: 108.3 E(32554): 9.4e-25 Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 10 20 30 40 50 60 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 70 80 90 100 >>CCDS4788.1 HMGA1 gene_id:3159|Hs108|chr6 (96 aa) initn: 410 init1: 410 opt: 417 Z-score: 341.3 bits: 68.1 E(32554): 1.1e-12 Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96) 10 20 30 40 50 60 pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR :::::::::::::::::::::::::::::::::: ::::::::::::::: CCDS47 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR 10 20 30 40 70 80 90 100 pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ ::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 50 60 70 80 90 107 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:06:30 2016 done: Mon Nov 7 02:06:31 2016 Total Scan time: 1.640 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]