FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1410, 113 aa 1>>>pF1KE1410 113 - 113 aa - 113 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3240+/-0.000298; mu= 10.8572+/- 0.018 mean_var=100.6681+/-20.642, 0's: 0 Z-trim(119.6): 93 B-trim: 315 in 1/55 Lambda= 0.127829 statistics sampled from 33590 (33781) to 33590 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.396), width: 16 Scan time: 4.460 The best scores are: opt bits E(85289) NP_055060 (OMIM: 603863) RING-box protein 2 isofor ( 113) 850 165.9 1.2e-41 NP_001188299 (OMIM: 603863) RING-box protein 2 iso ( 97) 439 90.1 7.3e-19 NP_899060 (OMIM: 603863) RING-box protein 2 isofor ( 90) 411 84.9 2.5e-17 NP_055063 (OMIM: 603814) E3 ubiquitin-protein liga ( 108) 392 81.4 3.2e-16 NP_001002246 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001002249 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001276345 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_057560 (OMIM: 614534) anaphase-promoting comple ( 84) 256 56.2 9.5e-09 NP_001002248 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001002247 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001002245 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001276343 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001276346 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 NP_001276344 (OMIM: 614534) anaphase-promoting com ( 84) 256 56.2 9.5e-09 >>NP_055060 (OMIM: 603863) RING-box protein 2 isoform 1 (113 aa) initn: 850 init1: 850 opt: 850 Z-score: 868.5 bits: 165.9 E(85289): 1.2e-41 Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 70 80 90 100 110 >>NP_001188299 (OMIM: 603863) RING-box protein 2 isoform (97 aa) initn: 422 init1: 412 opt: 439 Z-score: 459.7 bits: 90.1 E(85289): 7.3e-19 Smith-Waterman score: 687; 85.8% identity (85.8% similar) in 113 aa overlap (1-113:1-97) 10 20 30 40 50 60 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVM-- 10 20 30 40 50 70 80 90 100 110 pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK ::::::::::::::::::::::::::::::::::::::: NP_001 --------------VVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 60 70 80 90 >>NP_899060 (OMIM: 603863) RING-box protein 2 isoform 3 (90 aa) initn: 432 init1: 401 opt: 411 Z-score: 432.2 bits: 84.9 E(85289): 2.5e-17 Smith-Waterman score: 411; 79.3% identity (86.6% similar) in 82 aa overlap (1-79:1-76) 10 20 30 40 50 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQ--VM :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :. NP_899 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DACLRCQAENKQEDCVVVW-GECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK :. :. ::. .:.: :: NP_899 DVKLKT---NKR---TVLWSGENVIIPSTTAACPCG 70 80 90 >>NP_055063 (OMIM: 603814) E3 ubiquitin-protein ligase R (108 aa) initn: 392 init1: 220 opt: 392 Z-score: 412.3 bits: 81.4 E(85289): 3.2e-16 Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (20-112:11-107) 10 20 30 40 50 pF1KE1 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD ::..:: : : : .:::::::.:.::. :.::::: ..:: NP_055 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ACLRCQAENKQ---EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK :..:::.. . :.:.:.:: :::.:: :.: :.: . ::: ...: :. : NP_055 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 60 70 80 90 100 >>NP_001002246 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_001 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001002249 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_001 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001276345 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_001 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_057560 (OMIM: 614534) anaphase-promoting complex su (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_057 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_057 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001002248 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_001 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 >>NP_001002247 (OMIM: 614534) anaphase-promoting complex (84 aa) initn: 219 init1: 92 opt: 256 Z-score: 278.0 bits: 56.2 E(85289): 9.5e-09 Smith-Waterman score: 256; 37.2% identity (67.9% similar) in 78 aa overlap (32-106:5-80) 10 20 30 40 50 60 pF1KE1 ADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDAC .: ::.:: : : .. ..:.:::. : NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCC 10 20 30 70 80 90 100 110 pF1KE1 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQRIGK :.. . .:: .:::.:.: :: :. :.. .. .::.:.:.: NP_001 PDCKVPG--DDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 40 50 60 70 80 113 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:07:45 2016 done: Mon Nov 7 02:07:45 2016 Total Scan time: 4.460 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]