FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1410, 113 aa 1>>>pF1KE1410 113 - 113 aa - 113 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2282+/-0.000661; mu= 11.4156+/- 0.040 mean_var=93.7902+/-19.124, 0's: 0 Z-trim(112.9): 68 B-trim: 0 in 0/54 Lambda= 0.132433 statistics sampled from 13558 (13629) to 13558 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.419), width: 16 Scan time: 1.560 The best scores are: opt bits E(32554) CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3 ( 113) 850 171.2 1.2e-43 CCDS56283.1 RNF7 gene_id:9616|Hs108|chr3 ( 97) 439 92.6 4.6e-20 CCDS43158.1 RNF7 gene_id:9616|Hs108|chr3 ( 90) 411 87.3 1.8e-18 CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22 ( 108) 392 83.7 2.5e-17 >>CCDS3118.1 RNF7 gene_id:9616|Hs108|chr3 (113 aa) initn: 850 init1: 850 opt: 850 Z-score: 897.2 bits: 171.2 E(32554): 1.2e-43 Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 70 80 90 100 110 >>CCDS56283.1 RNF7 gene_id:9616|Hs108|chr3 (97 aa) initn: 422 init1: 412 opt: 439 Z-score: 473.6 bits: 92.6 E(32554): 4.6e-20 Smith-Waterman score: 687; 85.8% identity (85.8% similar) in 113 aa overlap (1-113:1-97) 10 20 30 40 50 60 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVM-- 10 20 30 40 50 70 80 90 100 110 pF1KE1 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK ::::::::::::::::::::::::::::::::::::::: CCDS56 --------------VVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK 60 70 80 90 >>CCDS43158.1 RNF7 gene_id:9616|Hs108|chr3 (90 aa) initn: 432 init1: 401 opt: 411 Z-score: 445.1 bits: 87.3 E(32554): 1.8e-18 Smith-Waterman score: 411; 79.3% identity (86.6% similar) in 82 aa overlap (1-79:1-76) 10 20 30 40 50 pF1KE1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQ--VM :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :. CCDS43 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DACLRCQAENKQEDCVVVW-GECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK :. :. ::. .:.: :: CCDS43 DVKLKT---NKR---TVLWSGENVIIPSTTAACPCG 70 80 90 >>CCDS14009.1 RBX1 gene_id:9978|Hs108|chr22 (108 aa) initn: 392 init1: 220 opt: 392 Z-score: 424.5 bits: 83.7 E(32554): 2.5e-17 Smith-Waterman score: 392; 50.5% identity (76.3% similar) in 97 aa overlap (20-112:11-107) 10 20 30 40 50 pF1KE1 MADVEDGEETCALASHSGSSGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMD ::..:: : : : .:::::::.:.::. :.::::: ..:: CCDS14 MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMD 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ACLRCQAENKQ---EDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIGK :..:::.. . :.:.:.:: :::.:: :.: :.: . ::: ...: :. : CCDS14 LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 60 70 80 90 100 113 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:07:44 2016 done: Mon Nov 7 02:07:44 2016 Total Scan time: 1.560 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]