FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6230, 300 aa
  1>>>pF1KE6230 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0736+/-0.000776; mu= 16.8007+/- 0.047
 mean_var=62.9287+/-12.389, 0's: 0 Z-trim(107.4): 8  B-trim: 0 in 0/50
 Lambda= 0.161678
 statistics sampled from 9523 (9525) to 9523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.293), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS3417.1 CD38 gene_id:952|Hs108|chr4             ( 300) 2100 498.2 3.1e-141
CCDS3416.1 BST1 gene_id:683|Hs108|chr4             ( 318)  659 162.1 4.9e-40


>>CCDS3417.1 CD38 gene_id:952|Hs108|chr4                  (300 aa)
 initn: 2100 init1: 2100 opt: 2100  Z-score: 2649.2  bits: 498.2 E(32554): 3.1e-141
Smith-Waterman score: 2100; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KE6 MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 SNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQTLEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQTLEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 WVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSCTSEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSCTSEI
              250       260       270       280       290       300

>>CCDS3416.1 BST1 gene_id:683|Hs108|chr4                  (318 aa)
 initn: 569 init1: 382 opt: 659  Z-score: 832.3  bits: 162.1 E(32554): 4.9e-40
Smith-Waterman score: 659; 36.8% identity (66.0% similar) in 285 aa overlap (16-296:6-280)

               10        20        30        40        50        60
pF1KE6 MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP
                      :  ::  :: : . .:.:.:..  :      : .: : ::. .. 
CCDS34           MAAQGCAASRLLQLLLQLLLLLLLLAAGGA------RARWRGEGTSAHLR
                         10        20        30              40    

               70         80        90       100       110         
pF1KE6 ETVLARCVKYTEI-HPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPC
       .  :.::..:  .  ::.:. .: ..:.::: : ..: ::..   ::. ...:. ...: 
CCDS34 DIFLGRCAEYRALLSPEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPR
           50        60        70         80        90       100   

     120       130       140       150       160       170         
pF1KE6 NKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKD
       .: :.:   . :...:..  : .. : :.: : .:: :.:: . : : ..:::::   .:
CCDS34 DKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SED
           110       120       130       140       150        160  

     180       190       200       210        220       230        
pF1KE6 CSNNPVSVFWKTVSRRFAEAACDVVHVMLNGSR-SKIFDKNSTFGSVEVHNLQPEKVQTL
       : ::::. ::: .: .... .  :.:::::::. .  .  .. :.. :. ::: ::.  .
CCDS34 CENNPVDSFWKRASIQYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRI
            170       180       190       200       210       220  

      240         250       260       270       280       290      
pF1KE6 EAWVIH--GGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC
       : ::.:  ::   . . : . ..: ::. ..  ..:.:: : ::: :.:::: .    .:
CCDS34 EIWVMHEIGG--PNVESCGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDC
            230         240       250       260       270       280

        300                                  
pF1KE6 TSEI                                  
                                             
CCDS34 ALKSAAAATQRKAPSLYTEQRAGLIIPLFLVLASRTQL
              290       300       310        




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:17:37 2016 done: Tue Nov  8 11:17:37 2016
 Total Scan time:  1.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]