FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1370, 249 aa 1>>>pF1KE1370 249 - 249 aa - 249 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9486+/-0.000408; mu= 15.8881+/- 0.025 mean_var=54.1561+/-10.810, 0's: 0 Z-trim(111.0): 16 B-trim: 124 in 1/57 Lambda= 0.174281 statistics sampled from 19421 (19430) to 19421 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.228), width: 16 Scan time: 6.370 The best scores are: opt bits E(85289) NP_000356 (OMIM: 190450,615512) triosephosphate is ( 249) 1649 422.6 3.1e-118 NP_001152759 (OMIM: 190450,615512) triosephosphate ( 286) 1649 422.7 3.5e-118 NP_001244955 (OMIM: 190450,615512) triosephosphate ( 167) 1096 283.5 1.6e-76 >>NP_000356 (OMIM: 190450,615512) triosephosphate isomer (249 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 2243.6 bits: 422.6 E(85289): 3.1e-118 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249) 10 20 30 40 50 60 pF1KE1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 190 200 210 220 230 240 pF1KE1 FVDIINAKQ ::::::::: NP_000 FVDIINAKQ >>NP_001152759 (OMIM: 190450,615512) triosephosphate iso (286 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 2242.7 bits: 422.7 E(85289): 3.5e-118 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:38-286) 10 20 30 pF1KE1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLN :::::::::::::::::::::::::::::: NP_001 AEFHFAALYISGQWPRLRADTDLQRLGSSAMAPSRKFFVGGNWKMNGRKQSLGELIGTLN 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE1 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG 190 200 210 220 230 240 220 230 240 pF1KE1 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ ::::::::::::::::::::::::::::::::::::::: NP_001 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 250 260 270 280 >>NP_001244955 (OMIM: 190450,615512) triosephosphate iso (167 aa) initn: 1096 init1: 1096 opt: 1096 Z-score: 1494.8 bits: 283.5 E(85289): 1.6e-76 Smith-Waterman score: 1096; 100.0% identity (100.0% similar) in 167 aa overlap (83-249:1-167) 60 70 80 90 100 110 pF1KE1 RQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQ :::::::::::::::::::::::::::::: NP_001 MIKDCGATWVVLGHSERRHVFGESDELIGQ 10 20 30 120 130 140 150 160 170 pF1KE1 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV 100 110 120 130 140 150 240 pF1KE1 GGASLKPEFVDIINAKQ ::::::::::::::::: NP_001 GGASLKPEFVDIINAKQ 160 249 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:11:09 2016 done: Mon Nov 7 02:11:10 2016 Total Scan time: 6.370 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]