FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3938, 191 aa
  1>>>pF1KE3938 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0803+/-0.000876; mu= 14.6009+/- 0.053
 mean_var=78.4664+/-15.797, 0's: 0 Z-trim(108.2): 164  B-trim: 351 in 1/51
 Lambda= 0.144788
 statistics sampled from 9879 (10070) to 9879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS11415.1 NKIRAS2 gene_id:28511|Hs108|chr17      ( 191) 1259 272.0 1.5e-73
CCDS33717.1 NKIRAS1 gene_id:28512|Hs108|chr3       ( 192)  907 198.5 2.1e-51
CCDS45679.1 NKIRAS2 gene_id:28511|Hs108|chr17      ( 135)  531 119.8   7e-28
CCDS45680.1 NKIRAS2 gene_id:28511|Hs108|chr17      (  97)  365 85.0 1.5e-17


>>CCDS11415.1 NKIRAS2 gene_id:28511|Hs108|chr17           (191 aa)
 initn: 1259 init1: 1259 opt: 1259  Z-score: 1433.8  bits: 272.0 E(32554): 1.5e-73
Smith-Waterman score: 1259; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KE3 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLS
              130       140       150       160       170       180

              190 
pF1KE3 RKNKGSGSLDG
       :::::::::::
CCDS11 RKNKGSGSLDG
              190 

>>CCDS33717.1 NKIRAS1 gene_id:28512|Hs108|chr3            (192 aa)
 initn: 923 init1: 885 opt: 907  Z-score: 1036.4  bits: 198.5 E(32554): 2.1e-51
Smith-Waterman score: 907; 71.4% identity (93.1% similar) in 189 aa overlap (1-188:1-189)

               10        20        30        40        50        60
pF1KE3 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY
       :::.:::::::  :::::.::::::::::..: :  ::.::.:..:.::::::.::...:
CCDS33 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGMEDCETMEDVYMASVETDRGVKEQLHLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN
       :::::..:.:::.: :: .::.:::::... ::::::::::::::: ::::::.::::::
CCDS33 DTRGLQEGVELPKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGN
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE3 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPL-
       : ::.:::.:: .:::.:::::::.::::.:.::..:.:::. ::::..::::::.::: 
CCDS33 KIDLSEQRQVDAEVAQQWAKSEKVRLWEVTVTDRKTLIEPFTLLASKLSQPQSKSSFPLP
              130       140       150       160       170       180

     180       190 
pF1KE3 SRKNKGSGSLDG
       .:::::...   
CCDS33 GRKNKGNSNSEN
              190  

>>CCDS45679.1 NKIRAS2 gene_id:28511|Hs108|chr17           (135 aa)
 initn: 528 init1: 528 opt: 531  Z-score: 614.0  bits: 119.8 E(32554): 7e-28
Smith-Waterman score: 761; 70.7% identity (70.7% similar) in 191 aa overlap (1-191:1-135)

               10        20        30        40        50        60
pF1KE3 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS45 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQV---
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE3 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN
                                                            :::::::
CCDS45 -----------------------------------------------------TIVVLGN
                                                             60    

              130       140       150       160       170       180
pF1KE3 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLS
           70        80        90       100       110       120    

              190 
pF1KE3 RKNKGSGSLDG
       :::::::::::
CCDS45 RKNKGSGSLDG
          130     

>>CCDS45680.1 NKIRAS2 gene_id:28511|Hs108|chr17           (97 aa)
 initn: 365 init1: 365 opt: 365  Z-score: 428.5  bits: 85.0 E(32554): 1.5e-17
Smith-Waterman score: 365; 98.2% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KE3 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.   
CCDS45 MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQIAES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGN
                                                                   
CCDS45 LFSVWSCSRRRLTNPRTRRRSPSWSLATSVTYRSSGV                       
               70        80        90                              




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:47:54 2016 done: Sun Nov  6 01:47:55 2016
 Total Scan time:  1.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]