FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6202, 189 aa 1>>>pF1KE6202 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8903+/-0.0003; mu= 14.8782+/- 0.019 mean_var=57.8054+/-11.805, 0's: 0 Z-trim(115.5): 24 B-trim: 53 in 1/48 Lambda= 0.168690 statistics sampled from 25949 (25972) to 25949 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.305), width: 16 Scan time: 4.280 The best scores are: opt bits E(85289) NP_001638 (OMIM: 107740) apolipoprotein D precurso ( 189) 1276 318.4 4.5e-87 NP_006735 (OMIM: 180250,615147,616428) retinol-bin ( 201) 195 55.3 7.4e-08 NP_001310446 (OMIM: 180250,615147,616428) retinol- ( 201) 195 55.3 7.4e-08 NP_001310447 (OMIM: 180250,615147,616428) retinol- ( 199) 185 52.8 4e-07 >>NP_001638 (OMIM: 107740) apolipoprotein D precursor [H (189 aa) initn: 1276 init1: 1276 opt: 1276 Z-score: 1684.3 bits: 318.4 E(85289): 4.5e-87 Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE6 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT 130 140 150 160 170 180 pF1KE6 DQVNCPKLS ::::::::: NP_001 DQVNCPKLS >>NP_006735 (OMIM: 180250,615147,616428) retinol-binding (201 aa) initn: 168 init1: 81 opt: 195 Z-score: 262.1 bits: 55.3 E(85289): 7.4e-08 Smith-Waterman score: 195; 29.9% identity (59.8% similar) in 174 aa overlap (2-158:4-165) 10 20 30 40 50 pF1KE6 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFE : ::::.::.. :.: . . . :.:::: .. : :: . .: : . NP_006 MKWVWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NGRCIQANYSLMENGKIKVLNQ---ELRADGTVNQIEGEATPVNLTEPAKLEVKFSW--- : :..:. :.:.... . .: . : . .: .. .:::...:. : NP_006 LQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA-DMVGTFTDTEDPAKFKMKY-WGVA 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 -FMPSA--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVD :. .. .::. :::..::. ::: .:...: ......:.:: :::: NP_006 SFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQK 120 130 140 150 160 170 180 pF1KE6 SLKNILTSNNIDVKKMTVTDQVNCPKLS NP_006 IVRQRQEELCLARQYRLIVHNGYCDGRSERNLL 170 180 190 200 >>NP_001310446 (OMIM: 180250,615147,616428) retinol-bind (201 aa) initn: 168 init1: 81 opt: 195 Z-score: 262.1 bits: 55.3 E(85289): 7.4e-08 Smith-Waterman score: 195; 29.9% identity (59.8% similar) in 174 aa overlap (2-158:4-165) 10 20 30 40 50 pF1KE6 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFE : ::::.::.. :.: . . . :.:::: .. : :: . .: : . NP_001 MKWVWALLLLAALGS------GRAERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLF 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NGRCIQANYSLMENGKIKVLNQ---ELRADGTVNQIEGEATPVNLTEPAKLEVKFSW--- : :..:. :.:.... . .: . : . .: .. .:::...:. : NP_001 LQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCA-DMVGTFTDTEDPAKFKMKY-WGVA 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 -FMPSA--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVD :. .. .::. :::..::. ::: .:...: ......:.:: :::: NP_001 SFLQKGNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQK 120 130 140 150 160 170 180 pF1KE6 SLKNILTSNNIDVKKMTVTDQVNCPKLS NP_001 IVRQRQEELCLARQYRLIVHNGYCDGRSERNLL 170 180 190 200 >>NP_001310447 (OMIM: 180250,615147,616428) retinol-bind (199 aa) initn: 169 init1: 81 opt: 185 Z-score: 249.0 bits: 52.8 E(85289): 4e-07 Smith-Waterman score: 185; 29.6% identity (63.4% similar) in 142 aa overlap (33-158:27-163) 10 20 30 40 50 60 pF1KE6 MLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEI-EKIPTTFENGRC :.:::: .. : :: . .: : . NP_001 MNYSKIPAQVDLRRQTERDCRVSSFRVKENFDKARFSGTWYAMAKKDPEGLFLQDN 10 20 30 40 50 70 80 90 100 110 pF1KE6 IQANYSLMENGKIKVLNQ-ELRADGTVNQ-IEGEATPVNLTEPAKLEVKFSW----FMPS : :..:. :.:.... . ..: .. . . .: .. .:::...:. : :. . NP_001 IVAEFSVDETGQMSATAKGRVRLLNNWDVCADMVGTFTDTEDPAKFKMKY-WGVASFLQK 60 70 80 90 100 110 120 130 140 150 160 pF1KE6 A--PYWILATDYENYALVYSCTCIIQLFHVD------FAWILARNPN-LPPETVDSLKNI . .::. :::..::. ::: .:...: ......:.:: :::: NP_001 GNDDHWIVDTDYDTYAVQYSC----RLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQR 120 130 140 150 160 170 170 180 pF1KE6 LTSNNIDVKKMTVTDQVNCPKLS NP_001 QEELCLARQYRLIVHNGYCDGRSERNLL 180 190 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:03:03 2016 done: Tue Nov 8 11:03:04 2016 Total Scan time: 4.280 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]