FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1441, 412 aa
  1>>>pF1KE1441 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9063+/-0.000691; mu= 14.7287+/- 0.042
 mean_var=89.3051+/-18.057, 0's: 0 Z-trim(111.7): 48  B-trim: 0 in 0/51
 Lambda= 0.135718
 statistics sampled from 12537 (12585) to 12537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.387), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS13691.1 WDR4 gene_id:10785|Hs108|chr21         ( 412) 2773 552.7 2.3e-157


>>CCDS13691.1 WDR4 gene_id:10785|Hs108|chr21              (412 aa)
 initn: 2773 init1: 2773 opt: 2773  Z-score: 2938.5  bits: 552.7 E(32554): 2.3e-157
Smith-Waterman score: 2773; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KE1 MAGSVGLALCGQTLVVRGGSRFLATSIASSDDDSLFIYDCSAAEKKSQENKGEDAPLDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGSVGLALCGQTLVVRGGSRFLATSIASSDDDSLFIYDCSAAEKKSQENKGEDAPLDQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SGAILASTFSKSGSYFALTDDSKRLILFRTKPWQCLSVRTVARRCTALTFIASEEKVLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGAILASTFSKSGSYFALTDDSKRLILFRTKPWQCLSVRTVARRCTALTFIASEEKVLVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 ESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QGLWVLQDCQEAPLVLYRPVGDQWQSVPESTVLKKVSGVLRGNWAMLEGSAGADASFSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QGLWVLQDCQEAPLVLYRPVGDQWQSVPESTVLKKVSGVLRGNWAMLEGSAGADASFSSL
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KE1 YKATFDNVTSYLKKKEERLQQQLEKKQRRRSPPPGPDGHAKKMRPGEATLSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YKATFDNVTSYLKKKEERLQQQLEKKQRRRSPPPGPDGHAKKMRPGEATLSC
              370       380       390       400       410  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:16:47 2016 done: Mon Nov  7 02:16:48 2016
 Total Scan time:  3.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]