Result of FASTA (omim) for
pFN21AE1529
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1529, 147 aa
1>>>pF1KE1529 147 - 147 aa - 147 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1447+/-0.000269; mu= 12.5675+/- 0.017
mean_var=65.5731+/-13.098, 0's: 0 Z-trim(120.9): 131 B-trim: 706 in 1/52
Lambda= 0.158384
statistics sampled from 36633 (36809) to 36633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.432), width: 16
Scan time: 4.700
The best scores are: opt bits E(85289)
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 1040 245.3 2.6e-65
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 955 225.9 1.8e-59
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 950 224.8 4e-59
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 950 224.8 4e-59
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 919 217.7 5.5e-57
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 913 216.4 1.6e-56
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 778 185.4 2.3e-47
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 776 184.9 2.9e-47
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 770 183.6 8e-47
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 770 183.6 8e-47
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 751 179.2 1.5e-45
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 670 160.9 9e-40
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 670 160.9 9.3e-40
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 670 160.9 9.3e-40
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 669 160.7 1.1e-39
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 669 160.7 1.1e-39
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 669 160.7 1.1e-39
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 669 160.7 1.1e-39
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 669 160.7 1.1e-39
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 664 159.5 2e-39
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 580 140.3 1.3e-33
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 573 138.7 4.2e-33
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 559 135.5 3.5e-32
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 453 111.2 6.3e-25
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 446 109.6 1.9e-24
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 440 108.3 4.9e-24
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 428 105.6 4.1e-23
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 404 100.0 1.5e-21
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 405 100.3 1.6e-21
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 389 96.6 1.7e-20
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 390 96.9 1.8e-20
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 374 93.1 1.4e-19
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 375 93.4 1.5e-19
NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 364 90.8 6.9e-19
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 362 90.5 1.3e-18
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 356 89.2 4e-18
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 353 88.4 4.9e-18
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 339 85.2 4.5e-17
NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 339 85.2 4.5e-17
NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 339 85.2 4.5e-17
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 339 85.2 4.5e-17
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 339 85.2 4.5e-17
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 335 84.2 7.7e-17
NP_003960 (OMIM: 603173) NEDD8-conjugating enzyme ( 183) 320 80.9 1e-15
>>NP_003329 (OMIM: 602961) ubiquitin-conjugating enzyme (147 aa)
initn: 1040 init1: 1040 opt: 1040 Z-score: 1293.6 bits: 245.3 E(85289): 2.6e-65
Smith-Waterman score: 1040; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:::::::::::::::::::::::::::
NP_003 PDIAQIYKSDKEKYNRHAREWTQKYAM
130 140
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 955 init1: 955 opt: 955 Z-score: 1188.7 bits: 225.9 E(85289): 1.8e-59
Smith-Waterman score: 955; 89.1% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::.:: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:.::::: ::::::::::
NP_003 PEIARIYKTDREKYNRIAREWTQKYAM
130 140
>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871619 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_003 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_003 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: .:::::::::
NP_871 PEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 950 init1: 950 opt: 950 Z-score: 1182.5 bits: 224.8 E(85289): 4e-59
Smith-Waterman score: 950; 88.4% identity (97.3% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY
::::::.:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLV
::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::::
NP_871 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLV
70 80 90 100 110 120
130 140
pF1KE1 PDIAQIYKSDKEKYNRHAREWTQKYAM
:.::.:::.:..:::: :::::.::::
NP_871 PEIARIYKTDRDKYNRLAREWTEKYAML
130 140
147 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:17:53 2016 done: Mon Nov 7 02:17:54 2016
Total Scan time: 4.700 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]