FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1112, 142 aa 1>>>pF1KE1112 142 - 142 aa - 142 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4767+/-0.000365; mu= 9.7288+/- 0.023 mean_var=57.5342+/-11.492, 0's: 0 Z-trim(112.7): 23 B-trim: 256 in 2/50 Lambda= 0.169087 statistics sampled from 21746 (21769) to 21746 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.255), width: 16 Scan time: 4.770 The best scores are: opt bits E(85289) NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142) 925 233.8 7.4e-62 NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142) 925 233.8 7.4e-62 NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142) 588 151.5 4.1e-37 XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin ( 142) 563 145.4 2.8e-35 NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142) 563 145.4 2.8e-35 XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin ( 154) 563 145.5 3e-35 NP_001003938 (OMIM: 609639) hemoglobin subunit mu ( 141) 430 113.0 1.6e-25 NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147) 381 101.1 6.8e-22 NP_000510 (OMIM: 142000) hemoglobin subunit delta ( 147) 373 99.1 2.6e-21 NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 366 97.4 8.5e-21 NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 363 96.7 1.4e-20 NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 332 89.1 2.7e-18 NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 180 52.0 4.1e-07 XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 180 52.0 4.1e-07 NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 180 52.0 4.1e-07 NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 180 52.0 4.1e-07 XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin ( 137) 141 42.5 0.00027 NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 141 42.5 0.00036 XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 141 42.5 0.00038 >>NP_000508 (OMIM: 140700,141850,604131,613978) hemoglob (142 aa) initn: 925 init1: 925 opt: 925 Z-score: 1231.5 bits: 233.8 E(85289): 7.4e-62 Smith-Waterman score: 925; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 70 80 90 100 110 120 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR :::::::::::::::::::::: NP_000 AVHASLDKFLASVSTVLTSKYR 130 140 >>NP_000549 (OMIM: 140700,141800,604131,613978) hemoglob (142 aa) initn: 925 init1: 925 opt: 925 Z-score: 1231.5 bits: 233.8 E(85289): 7.4e-62 Smith-Waterman score: 925; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 70 80 90 100 110 120 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR :::::::::::::::::::::: NP_000 AVHASLDKFLASVSTVLTSKYR 130 140 >>NP_005322 (OMIM: 142240) hemoglobin subunit theta-1 [H (142 aa) initn: 588 init1: 588 opt: 588 Z-score: 787.2 bits: 151.5 E(85289): 4.1e-37 Smith-Waterman score: 588; 62.0% identity (87.3% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG :.:: :.. :.: : :.:...: : .::::: ::.::.::::: :.::: ::.::..:: NP_005 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP .::::::. :: ..::.:.:::::: ::: .:::::..:.::.:::::::: : :..:.: NP_005 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 70 80 90 100 110 120 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR :..:::::::. : ..:.:.:: NP_005 ALQASLDKFLSHVISALVSEYR 130 140 >>XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin subu (142 aa) initn: 563 init1: 563 opt: 563 Z-score: 754.3 bits: 145.4 E(85289): 2.8e-35 Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG : :. ...: . . :.:....: :.:.:::.::: : :::::::::: ::::...:: XP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP .::. :. .:: .::. .::: ::.:::. :::::::::::::::::::::..::.:: XP_005 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 70 80 90 100 110 120 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR .::. ::::. ::.::: ::: XP_005 EAHAAWDKFLSVVSSVLTEKYR 130 140 >>NP_005323 (OMIM: 142310) hemoglobin subunit zeta [Homo (142 aa) initn: 563 init1: 563 opt: 563 Z-score: 754.3 bits: 145.4 E(85289): 2.8e-35 Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG : :. ...: . . :.:....: :.:.:::.::: : :::::::::: ::::...:: NP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP .::. :. .:: .::. .::: ::.:::. :::::::::::::::::::::..::.:: NP_005 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 70 80 90 100 110 120 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR .::. ::::. ::.::: ::: NP_005 EAHAAWDKFLSVVSSVLTEKYR 130 140 >>XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin subu (154 aa) initn: 563 init1: 563 opt: 563 Z-score: 753.7 bits: 145.5 E(85289): 3e-35 Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:13-154) 10 20 30 40 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD : :. ...: . . :.:....: :.:.:::.::: : ::::::::: XP_005 MTCFFDAAHPAAMSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFD 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLV : ::::...::.::. :. .:: .::. .::: ::.:::. ::::::::::::::::: XP_005 LHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLV 70 80 90 100 110 120 110 120 130 140 pF1KE1 TLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR ::::..::.:: .::. ::::. ::.::: ::: XP_005 TLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR 130 140 150 >>NP_001003938 (OMIM: 609639) hemoglobin subunit mu [Hom (141 aa) initn: 430 init1: 430 opt: 430 Z-score: 579.0 bits: 113.0 E(85289): 1.6e-25 Smith-Waterman score: 430; 45.4% identity (75.9% similar) in 141 aa overlap (2-142:1-141) 10 20 30 40 50 60 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG .:: ..... .: ...: ...::: : :.: .:.::.::::.. . ..:. .:: NP_001 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHG 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP ... :. :: :::.. ::: :.:::: :::::.:: :: .:. :.::.:: ::: NP_001 QRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTV 60 70 80 90 100 110 130 140 pF1KE1 AVHASLDKFLASVSTVLTSKYR ..:. ::::..:..::: ::: NP_001 QMQAAWDKFLTGVAVVLTEKYR 120 130 140 >>NP_000509 (OMIM: 140700,141749,141900,603902,603903,60 (147 aa) initn: 325 init1: 273 opt: 381 Z-score: 514.1 bits: 101.1 E(85289): 6.8e-22 Smith-Waterman score: 381; 43.4% identity (74.5% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGS :.: .:. : : :::: .. : :.::: :... .: :. .: : ::: :. NP_000 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH .::.::::: :.....::.:.. .....::.:: ::.::: ::.::.. :. .:: : NP_000 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH 60 70 80 90 100 110 120 130 140 pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR . :::: :.:. .: .:.:...:. :: NP_000 FGKEFTPPVQAAYQKVVAGVANALAHKYH 120 130 140 >>NP_000510 (OMIM: 142000) hemoglobin subunit delta [Hom (147 aa) initn: 305 init1: 263 opt: 373 Z-score: 503.5 bits: 99.1 E(85289): 2.6e-21 Smith-Waterman score: 373; 43.4% identity (74.5% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GS :.: .:: :.: ::::.. : :.::: :... .: :. .: : ::: :. NP_000 MVHLTPEEKTAVNALWGKVNVDA--VGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH .::.::::: :.....::.:.. ...: ::.:: ::.::: ::.::.. :. .:: . NP_000 PKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARN 60 70 80 90 100 110 120 130 140 pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR . :::: ..:. .: .:.:...:. :: NP_000 FGKEFTPQMQAAYQKVVAGVANALAHKYH 120 130 140 >>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa) initn: 314 init1: 277 opt: 366 Z-score: 494.3 bits: 97.4 E(85289): 8.5e-21 Smith-Waterman score: 366; 41.4% identity (75.9% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA---- .. ::... . ::::... . :.:.: :... .: :. .: : .:: .:: NP_000 MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 -QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH .::.::::: .: .:. :.::. .... ::.:: ::.::: :::::.. :...:: : NP_000 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH 60 70 80 90 100 110 120 130 140 pF1KE1 LPAEFTPAVHASLDKFLASVSTVLTSKYR . :::: :.:: .:....:...:.:.: NP_000 FGKEFTPEVQASWQKMVTGVASALSSRYH 120 130 140 142 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:19:00 2016 done: Mon Nov 7 02:19:01 2016 Total Scan time: 4.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]