FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2612, 385 aa
  1>>>pF1KE2612 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7064+/-0.00109; mu= 14.1629+/- 0.065
 mean_var=62.9389+/-12.699, 0's: 0 Z-trim(102.0): 29  B-trim: 0 in 0/49
 Lambda= 0.161665
 statistics sampled from 6763 (6764) to 6763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.208), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS3956.1 PELO gene_id:53918|Hs108|chr5           ( 385) 2502 592.6  2e-169


>>CCDS3956.1 PELO gene_id:53918|Hs108|chr5                (385 aa)
 initn: 2502 init1: 2502 opt: 2502  Z-score: 3155.3  bits: 592.6 E(32554): 2e-169
Smith-Waterman score: 2502; 99.7% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KE2 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKF
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS39 ALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQQAVKTDNKLLLENRSKF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLT
              310       320       330       340       350       360

              370       380     
pF1KE2 GVAAILRFPVPELSDQEGDSSSEED
       :::::::::::::::::::::::::
CCDS39 GVAAILRFPVPELSDQEGDSSSEED
              370       380     




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:05:24 2016 done: Tue Nov  8 17:05:25 2016
 Total Scan time:  1.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]