FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6705, 767 aa 1>>>pF1KE6705 767 - 767 aa - 767 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7534+/-0.00094; mu= 17.9933+/- 0.056 mean_var=73.8382+/-14.652, 0's: 0 Z-trim(105.8): 15 B-trim: 0 in 0/50 Lambda= 0.149257 statistics sampled from 8632 (8641) to 8632 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.265), width: 16 Scan time: 2.950 The best scores are: opt bits E(32554) CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 ( 767) 5205 1130.6 0 CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 ( 765) 4523 983.8 0 >>CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 (767 aa) initn: 5205 init1: 5205 opt: 5205 Z-score: 6052.2 bits: 1130.6 E(32554): 0 Smith-Waterman score: 5205; 99.7% identity (99.9% similar) in 767 aa overlap (1-767:1-767) 10 20 30 40 50 60 pF1KE6 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFASSRFLQPVHKIDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFASSRFLQPVHKIDM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 EMKCCANLTGGYVVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAG ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 AIGPCVSLNVKGLCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGA :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 IQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE6 GPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPD 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE6 ESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVI 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE6 YLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFL 670 680 690 700 710 720 730 740 750 760 pF1KE6 LSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC ::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC 730 740 750 760 >>CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 (765 aa) initn: 3252 init1: 3252 opt: 4523 Z-score: 5258.6 bits: 983.8 E(32554): 0 Smith-Waterman score: 4523; 84.7% identity (95.7% similar) in 767 aa overlap (1-766:1-764) 10 20 30 40 50 60 pF1KE6 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL :.:::::::::::::::::::::::::::::::::::.: :.:::::::::::.:::::: CCDS96 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV ::: ::.:::::::::::::::::::::.:::::::.:.::::.::::::.::::.:::: CCDS96 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC . :: : :::::::::::.:..::::::::.::::::::: :::::::::::::::::.: CCDS96 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQA-RPAQPQEHPFASSRFLQPVHKID :::::::::::::::.:::.:.::::.: .:. :: : : :. : :.::::::.::: CCDS96 EGISKSYVFRGTKDLSAKQLQEMLGLSK--VPLTQATRGPQVQQPP-PSNRFLQPVQKID 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 MNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQG ::::::::::::::::: ::::::::.:::::::::::: ::::::::::.: ::: ::: CCDS96 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 PGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGL :::::::::: ::::::::.::::...::.:::.: ::::.:..:: ::::::::::::: CCDS96 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGL 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 LEMKCCANLTGGYVVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIA :::::: ::::::.:::::::::::::::::.::::..:.:.:.::.::..:::::.::. CCDS96 LEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKIS 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE6 GAIGPCVSLNVKGLCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRG :::::::::: :: ::::::.:.::: :::::::.::.::.::::::::::.:::::::: CCDS96 GAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRG 420 430 440 450 460 470 480 490 500 510 520 530 pF1KE6 AIQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESE ::::::.::::: :::::::::::::::.:.:...: :.:::::::.:::::...:::.: CCDS96 AIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETE 480 490 500 510 520 530 540 550 560 570 580 590 pF1KE6 EGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSP :::::::::::::::::::::.:.:.::.:::.:..:::::::::::::: ::::::::: CCDS96 EGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSP 540 550 560 570 580 590 600 610 620 630 640 650 pF1KE6 DESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIV :::::::::: ::::::::::::::::.::: :::::::::::::::::::::::::::. CCDS96 DESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQIL 600 610 620 630 640 650 660 670 680 690 700 710 pF1KE6 IYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARF :: :::::::::.:::::::::::.::::::.:::::::..::::::::.:::::::::: CCDS96 IYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARF 660 670 680 690 700 710 720 730 740 750 760 pF1KE6 LLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC :::::::::::::.::::::.:::::::::::::::::::::::::: CCDS96 LLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA 720 730 740 750 760 767 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:32:26 2016 done: Tue Nov 8 15:32:26 2016 Total Scan time: 2.950 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]