FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1534, 94 aa 1>>>pF1KE1534 94 - 94 aa - 94 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9419+/-0.000313; mu= 10.3220+/- 0.019 mean_var=53.5290+/-10.672, 0's: 0 Z-trim(115.5): 40 B-trim: 80 in 1/55 Lambda= 0.175299 statistics sampled from 25924 (25963) to 25924 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.304), width: 16 Scan time: 4.030 The best scores are: opt bits E(85289) NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 617 163.4 4.9e-41 NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 579 153.8 4.2e-38 NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 217 62.3 1.8e-10 NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 194 56.4 8e-09 NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 147 44.6 3.3e-05 NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 142 43.3 7.9e-05 NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 127 39.5 0.0011 NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 126 39.3 0.0015 NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 116 36.7 0.007 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 116 36.7 0.0079 >>NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 isof (94 aa) initn: 617 init1: 617 opt: 617 Z-score: 857.8 bits: 163.4 E(85289): 4.9e-41 Smith-Waterman score: 617; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 10 20 30 40 50 60 70 80 90 pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF :::::::::::::::::::::::::::::::::: NP_005 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF 70 80 90 >>NP_001289052 (OMIM: 604852) C-X-C motif chemokine 11 i (106 aa) initn: 579 init1: 579 opt: 579 Z-score: 805.0 bits: 153.8 E(85289): 4.2e-38 Smith-Waterman score: 579; 97.8% identity (97.8% similar) in 91 aa overlap (1-91:1-91) 10 20 30 40 50 60 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 10 20 30 40 50 60 70 80 90 pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF ::::::::::::::::::::::::::: :: NP_001 EVIITLKENKGQRCLNPKSKQARLIIKLKERIFKNIKTYEVLEKSI 70 80 90 100 >>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa) initn: 205 init1: 140 opt: 217 Z-score: 309.1 bits: 62.3 E(85289): 1.8e-10 Smith-Waterman score: 217; 37.6% identity (71.0% similar) in 93 aa overlap (1-92:1-92) 10 20 30 40 50 pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK :. .:. . :..:: . . ::: :. ..::: ::. . .... ... . . :: .:.: NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 10 20 30 40 50 60 60 70 80 90 pF1KE1 IEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF ::.: ::: : : :::: : ... .::: :.. NP_002 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS 70 80 90 100 110 NP_002 RQKKTT 120 >>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec (98 aa) initn: 196 init1: 182 opt: 194 Z-score: 279.4 bits: 56.4 E(85289): 8e-09 Smith-Waterman score: 194; 31.5% identity (64.1% similar) in 92 aa overlap (1-92:1-92) 10 20 30 40 50 60 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI :. .. : ..: . .:: :. . :: ::. . . :. ..:: :. :. : .. NP_001 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV 10 20 30 40 50 60 70 80 90 pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF :.: :.:.. .:::::.:: . ..: : .. NP_001 EIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP 70 80 90 >>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa) initn: 94 init1: 56 opt: 147 Z-score: 214.5 bits: 44.6 E(85289): 3.3e-05 Smith-Waterman score: 147; 31.4% identity (68.6% similar) in 86 aa overlap (6-89:18-100) 10 20 30 40 pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEK .:. : ... :. . : :. . :: :. ...... .:.. NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCL-QTLQGIHLKNIQS 10 20 30 40 50 50 60 70 80 90 pF1KE1 ASIMYPSNNCDKIEVIITLKENKGQR-CLNPKSKQARLIIKKVERKNF ... :. .: . ::: :::. ::. :::: : ... ::.:. NP_002 VKVKSPGPHCAQTEVIATLKN--GQKACLNPASPMVKKIIEKMLKNGKSN 60 70 80 90 100 >>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa) initn: 101 init1: 59 opt: 142 Z-score: 207.7 bits: 43.3 E(85289): 7.9e-05 Smith-Waterman score: 142; 29.5% identity (67.0% similar) in 88 aa overlap (6-92:18-103) 10 20 30 40 pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEK .:. : ... :. . : . . :: :. ...... .:.. NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCL-QTLQGIHLKNIQS 10 20 30 40 50 50 60 70 80 90 pF1KE1 ASIMYPSNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF ... :. .: . ::: :::..: . :::: : ... ::.:. : NP_002 VNVRSPGPHCAQTEVIATLKNGK-KACLNPASPMVQKIIEKILNKGSTN 60 70 80 90 100 >>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa) initn: 92 init1: 53 opt: 127 Z-score: 187.2 bits: 39.5 E(85289): 0.0011 Smith-Waterman score: 127; 32.8% identity (70.5% similar) in 61 aa overlap (29-89:42-100) 10 20 30 40 50 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCD :: :. ..... .:..... :. .: NP_001 NPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQT-LQGIHPKNIQSVNVKSPGPHCA 20 30 40 50 60 70 60 70 80 90 pF1KE1 KIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF . ::: :::... . :::: : .. ::.:. NP_001 QTEVIATLKNGR-KACLNPASPIVKKIIEKMLNSDKSN 80 90 100 >>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa) initn: 137 init1: 66 opt: 126 Z-score: 184.6 bits: 39.3 E(85289): 0.0015 Smith-Waterman score: 126; 26.2% identity (72.3% similar) in 65 aa overlap (24-88:57-119) 10 20 30 40 50 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYP .. . ::.:: ..... .:.. .. NP_002 SLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKT-TSGIHPKNIQSLEVIGK 30 40 50 60 70 80 60 70 80 90 pF1KE1 SNNCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF ...:...::: :::... . ::.: . . . :..: NP_002 GTHCNQVEVIATLKDGR-KICLDPDAPRIKKIVQKKLAGDESAD 90 100 110 120 >>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa) initn: 112 init1: 49 opt: 116 Z-score: 172.7 bits: 36.7 E(85289): 0.007 Smith-Waterman score: 116; 25.8% identity (60.8% similar) in 97 aa overlap (1-92:1-95) 10 20 30 40 50 pF1KE1 MSVKGMAIAL--AVILCATVVQG--FPMF-KRGRCLCIGPGVKAVKVADIEKASIMYPSN :. : .:.:: : .. :.. .: .: :. :: :: : . :.. .. . NP_000 MTSK-LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGP 10 20 30 40 50 60 70 80 90 pF1KE1 NCDKIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF .: . :.:. :.... . ::.:: . .. ...: .. NP_000 HCANTEIIVKLSDGR-ELCLDPKENWVQRVVEKFLKRAENS 60 70 80 90 >>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa) initn: 53 init1: 34 opt: 116 Z-score: 171.7 bits: 36.7 E(85289): 0.0079 Smith-Waterman score: 116; 31.1% identity (67.2% similar) in 61 aa overlap (29-89:48-106) 10 20 30 40 50 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCD :: :. .. :. : : ... . .:. NP_002 LCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQVFPAGPQCS 20 30 40 50 60 70 60 70 80 90 pF1KE1 KIEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF :.::. .::..: : ::.:.. . .:.:. NP_002 KVEVVASLKNGK-QVCLDPEAPFLKKVIQKILDSGNKKN 80 90 100 110 94 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:20:44 2016 done: Mon Nov 7 02:20:44 2016 Total Scan time: 4.030 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]