FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1534, 94 aa 1>>>pF1KE1534 94 - 94 aa - 94 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9388+/-0.000646; mu= 10.2268+/- 0.039 mean_var=51.8445+/-10.068, 0's: 0 Z-trim(109.3): 27 B-trim: 136 in 1/52 Lambda= 0.178124 statistics sampled from 10738 (10763) to 10738 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.331), width: 16 Scan time: 1.400 The best scores are: opt bits E(32554) CCDS3574.1 CXCL11 gene_id:6373|Hs108|chr4 ( 94) 617 165.7 3.8e-42 CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4 ( 125) 217 63.0 4.3e-11 >>CCDS3574.1 CXCL11 gene_id:6373|Hs108|chr4 (94 aa) initn: 617 init1: 617 opt: 617 Z-score: 870.2 bits: 165.7 E(32554): 3.8e-42 Smith-Waterman score: 617; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 pF1KE1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 10 20 30 40 50 60 70 80 90 pF1KE1 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF :::::::::::::::::::::::::::::::::: CCDS35 EVIITLKENKGQRCLNPKSKQARLIIKKVERKNF 70 80 90 >>CCDS34014.1 CXCL9 gene_id:4283|Hs108|chr4 (125 aa) initn: 205 init1: 140 opt: 217 Z-score: 312.7 bits: 63.0 E(32554): 4.3e-11 Smith-Waterman score: 217; 37.6% identity (71.0% similar) in 93 aa overlap (1-92:1-92) 10 20 30 40 50 pF1KE1 MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK :. .:. . :..:: . . ::: :. ..::: ::. . .... ... . . :: .:.: CCDS34 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 10 20 30 40 50 60 60 70 80 90 pF1KE1 IEVIITLKENKGQRCLNPKSKQARLIIKKVERKNF ::.: ::: : : :::: : ... .::: :.. CCDS34 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRS 70 80 90 100 110 CCDS34 RQKKTT 120 94 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:20:43 2016 done: Mon Nov 7 02:20:43 2016 Total Scan time: 1.400 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]