FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1405, 100 aa 1>>>pF1KE1405 100 - 100 aa - 100 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8927+/-0.000293; mu= 11.8893+/- 0.018 mean_var=58.0172+/-11.324, 0's: 0 Z-trim(116.8): 1 B-trim: 0 in 0/55 Lambda= 0.168382 statistics sampled from 28181 (28182) to 28181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.33), width: 16 Scan time: 4.440 The best scores are: opt bits E(85289) NP_001634 (OMIM: 107670,143890) apolipoprotein A-I ( 100) 622 158.5 1.7e-39 >>NP_001634 (OMIM: 107670,143890) apolipoprotein A-II pr (100 aa) initn: 622 init1: 622 opt: 622 Z-score: 830.0 bits: 158.5 E(85289): 1.7e-39 Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100) 10 20 30 40 50 60 pF1KE1 MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAE 10 20 30 40 50 60 70 80 90 100 pF1KE1 AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ :::::::::::::::::::::::::::::::::::::::: NP_001 AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 70 80 90 100 100 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:21:18 2016 done: Mon Nov 7 02:21:19 2016 Total Scan time: 4.440 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]