FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1405, 100 aa 1>>>pF1KE1405 100 - 100 aa - 100 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8523+/-0.000644; mu= 12.1996+/- 0.039 mean_var=59.2547+/-11.625, 0's: 0 Z-trim(109.7): 7 B-trim: 0 in 0/51 Lambda= 0.166615 statistics sampled from 11081 (11082) to 11081 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.34), width: 16 Scan time: 1.500 The best scores are: opt bits E(32554) CCDS1226.1 APOA2 gene_id:336|Hs108|chr1 ( 100) 622 156.9 1.9e-39 >>CCDS1226.1 APOA2 gene_id:336|Hs108|chr1 (100 aa) initn: 622 init1: 622 opt: 622 Z-score: 821.6 bits: 156.9 E(32554): 1.9e-39 Smith-Waterman score: 622; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100) 10 20 30 40 50 60 pF1KE1 MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAE 10 20 30 40 50 60 70 80 90 100 pF1KE1 AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ :::::::::::::::::::::::::::::::::::::::: CCDS12 AKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ 70 80 90 100 100 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:21:17 2016 done: Mon Nov 7 02:21:18 2016 Total Scan time: 1.500 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]