FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3628, 180 aa
  1>>>pF1KE3628 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3929+/-0.00082; mu= 12.5113+/- 0.050
 mean_var=64.4760+/-12.614, 0's: 0 Z-trim(106.8): 18  B-trim: 0 in 0/51
 Lambda= 0.159726
 statistics sampled from 9207 (9216) to 9207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.283), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS46439.1 GCG gene_id:2641|Hs108|chr2            ( 180) 1196 283.9 3.6e-77


>>CCDS46439.1 GCG gene_id:2641|Hs108|chr2                 (180 aa)
 initn: 1196 init1: 1196 opt: 1196  Z-score: 1498.9  bits: 283.9 E(32554): 3.6e-77
Smith-Waterman score: 1196; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE3 MKSIYFVAGLFVMLVQGSWQRSLQDTEEKSRSFSASQADPLSDPDQMNEDKRHSQGTFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MKSIYFVAGLFVMLVQGSWQRSLQDTEEKSRSFSASQADPLSDPDQMNEDKRHSQGTFTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DYSKYLDSRRAQDFVQWLMNTKRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAAKEFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DYSKYLDSRRAQDFVQWLMNTKRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAAKEFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AWLVKGRGRRDFPEEVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTKITDRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AWLVKGRGRRDFPEEVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTKITDRK
              130       140       150       160       170       180




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:22:29 2016 done: Mon Nov  7 02:22:30 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]