FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6132, 114 aa
  1>>>pF1KE6132 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9494+/-0.000322; mu= 12.3458+/- 0.020
 mean_var=69.7148+/-13.355, 0's: 0 Z-trim(116.6): 20  B-trim: 221 in 2/51
 Lambda= 0.153607
 statistics sampled from 27855 (27874) to 27855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.327), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(85289)
NP_002434 (OMIM: 157145,611928) beta-microseminopr ( 114)  813 188.3 2.2e-48
NP_619540 (OMIM: 157145,611928) beta-microseminopr (  77)  244 62.1 1.5e-10
NP_001037729 (OMIM: 612191) prostate-associated mi ( 139)  130 37.1  0.0094


>>NP_002434 (OMIM: 157145,611928) beta-microseminoprotei  (114 aa)
 initn: 813 init1: 813 opt: 813  Z-score: 989.6  bits: 188.3 E(85289): 2.2e-48
Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE6 MNVLLGSVVIFATFVTLCNASCYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MNVLLGSVVIFATFVTLCNASCYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETC
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE6 TCYETEISCCTLVSTPVGYDKDNCQRIFKKEDCKYIVVEKKDPKKTCSVSEWII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TCYETEISCCTLVSTPVGYDKDNCQRIFKKEDCKYIVVEKKDPKKTCSVSEWII
               70        80        90       100       110    

>>NP_619540 (OMIM: 157145,611928) beta-microseminoprotei  (77 aa)
 initn: 244 init1: 244 opt: 244  Z-score: 310.4  bits: 62.1 E(85289): 1.5e-10
Smith-Waterman score: 244; 90.2% identity (92.7% similar) in 41 aa overlap (1-41:1-41)

               10        20        30        40        50        60
pF1KE6 MNVLLGSVVIFATFVTLCNASCYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETC
       ::::::::::::::::::::::::::::::::::::  . :                   
NP_619 MNVLLGSVVIFATFVTLCNASCYFIPNEGVPGDSTRMFLHLWVMTKTTAKESSRRRTASI
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE6 TCYETEISCCTLVSTPVGYDKDNCQRIFKKEDCKYIVVEKKDPKKTCSVSEWII
                                                             
NP_619 SWWRRRTQKRPVLSVNG                                     
               70                                            

>>NP_001037729 (OMIM: 612191) prostate-associated micros  (139 aa)
 initn: 111 init1:  69 opt: 130  Z-score: 170.4  bits: 37.1 E(85289): 0.0094
Smith-Waterman score: 130; 23.9% identity (55.2% similar) in 67 aa overlap (42-107:49-114)

              20        30        40        50        60         70
pF1KE6 ATFVTLCNASCYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETCTC-YETEISCC
                                     .:.   ..  :   .:  ::: . . ..::
NP_001 GIICLVMSLLLQHPGVYSKCYFQAQAPCHYEGKYFTLGESWLRKDCFHCTCLHPVGVGCC
       20        30        40        50        60        70        

               80        90       100       110                    
pF1KE6 TLVSTPVGYDKDNCQRIFKKEDCKYIVVEKKDPKKTCSVSEWII                
          . :. .   .:.   .   :.. .:.:.::.  :                       
NP_001 DTSQHPIDFPA-GCEVRQEAGTCQFSLVQKSDPRLPCKGGGPDPEWGSANTPVPGAPAPH
       80         90       100       110       120       130       

NP_001 SS
         




114 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:44:18 2016 done: Tue Nov  8 09:44:19 2016
 Total Scan time:  3.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]