FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5112, 144 aa 1>>>pF1KE5112 144 - 144 aa - 144 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3896+/-0.000303; mu= 11.1357+/- 0.019 mean_var=66.0246+/-12.980, 0's: 0 Z-trim(116.9): 3 B-trim: 276 in 1/51 Lambda= 0.157842 statistics sampled from 28391 (28394) to 28391 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.333), width: 16 Scan time: 4.800 The best scores are: opt bits E(85289) NP_004672 (OMIM: 400014) eukaryotic translation in ( 144) 973 229.7 1.3e-60 NP_001403 (OMIM: 300186) eukaryotic translation in ( 144) 971 229.2 1.7e-60 NP_001265541 (OMIM: 400014) eukaryotic translation ( 127) 483 118.1 4.4e-27 >>NP_004672 (OMIM: 400014) eukaryotic translation initia (144 aa) initn: 973 init1: 973 opt: 973 Z-score: 1209.4 bits: 229.7 E(85289): 1.3e-60 Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 70 80 90 100 110 120 130 140 pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI :::::::::::::::::::::::: NP_004 FGPGDDDEIQFDDIGDDDEDIDDI 130 140 >>NP_001403 (OMIM: 300186) eukaryotic translation initia (144 aa) initn: 971 init1: 971 opt: 971 Z-score: 1206.9 bits: 229.2 E(85289): 1.7e-60 Smith-Waterman score: 971; 99.3% identity (100.0% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: NP_001 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 70 80 90 100 110 120 130 140 pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI :::::::::::::::::::::::: NP_001 FGPGDDDEIQFDDIGDDDEDIDDI 130 140 >>NP_001265541 (OMIM: 400014) eukaryotic translation ini (127 aa) initn: 485 init1: 461 opt: 483 Z-score: 607.2 bits: 118.1 E(85289): 4.4e-27 Smith-Waterman score: 816; 88.2% identity (88.2% similar) in 144 aa overlap (1-144:1-127) 10 20 30 40 50 60 pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT :::::::: ::::::::::::::::::::::::::::::::::: NP_001 IRGKLRKK-----------------DNKADVILKYNADEARSLKAYGELPEHAKINETDT 70 80 90 100 130 140 pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI :::::::::::::::::::::::: NP_001 FGPGDDDEIQFDDIGDDDEDIDDI 110 120 144 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:27:10 2016 done: Mon Nov 7 21:27:11 2016 Total Scan time: 4.800 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]