FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5112, 144 aa
  1>>>pF1KE5112 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6207+/-0.000667; mu= 9.7979+/- 0.040
 mean_var=65.3875+/-12.840, 0's: 0 Z-trim(109.9): 7  B-trim: 51 in 1/49
 Lambda= 0.158609
 statistics sampled from 11215 (11219) to 11215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.345), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS14795.1 EIF1AY gene_id:9086|Hs108|chrY         ( 144)  973 230.7 2.4e-61
CCDS14196.1 EIF1AX gene_id:1964|Hs108|chrX         ( 144)  971 230.3 3.3e-61
CCDS65368.1 EIF1AY gene_id:9086|Hs108|chrY         ( 127)  483 118.6 1.2e-27


>>CCDS14795.1 EIF1AY gene_id:9086|Hs108|chrY              (144 aa)
 initn: 973 init1: 973 opt: 973  Z-score: 1214.9  bits: 230.7 E(32554): 2.4e-61
Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
               70        80        90       100       110       120

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
CCDS14 FGPGDDDEIQFDDIGDDDEDIDDI
              130       140    

>>CCDS14196.1 EIF1AX gene_id:1964|Hs108|chrX              (144 aa)
 initn: 971 init1: 971 opt: 971  Z-score: 1212.4  bits: 230.3 E(32554): 3.3e-61
Smith-Waterman score: 971; 99.3% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS14 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
               70        80        90       100       110       120

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
CCDS14 FGPGDDDEIQFDDIGDDDEDIDDI
              130       140    

>>CCDS65368.1 EIF1AY gene_id:9086|Hs108|chrY              (127 aa)
 initn: 485 init1: 461 opt: 483  Z-score: 609.8  bits: 118.6 E(32554): 1.2e-27
Smith-Waterman score: 816; 88.2% identity (88.2% similar) in 144 aa overlap (1-144:1-127)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::                 :::::::::::::::::::::::::::::::::::
CCDS65 IRGKLRKK-----------------DNKADVILKYNADEARSLKAYGELPEHAKINETDT
                                70        80        90       100   

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
CCDS65 FGPGDDDEIQFDDIGDDDEDIDDI
           110       120       




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:27:10 2016 done: Mon Nov  7 21:27:10 2016
 Total Scan time:  1.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]