FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5304, 266 aa 1>>>pF1KE5304 266 - 266 aa - 266 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9397+/-0.000332; mu= 11.8100+/- 0.021 mean_var=75.9004+/-14.858, 0's: 0 Z-trim(115.0): 18 B-trim: 0 in 0/55 Lambda= 0.147215 statistics sampled from 25200 (25217) to 25200 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.296), width: 16 Scan time: 4.690 The best scores are: opt bits E(85289) NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266) 1732 377.0 2e-104 NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128) 155 41.9 0.00069 NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128) 155 41.9 0.00069 NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153) 145 39.8 0.0035 >>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho (266 aa) initn: 1732 init1: 1732 opt: 1732 Z-score: 1995.9 bits: 377.0 E(85289): 2e-104 Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266) 10 20 30 40 50 60 pF1KE5 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN 190 200 210 220 230 240 250 260 pF1KE5 VLGPKSVARIAKLEKAKAKELATKLG :::::::::::::::::::::::::: NP_000 VLGPKSVARIAKLEKAKAKELATKLG 250 260 >>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap (128 aa) initn: 132 init1: 132 opt: 155 Z-score: 190.8 bits: 41.9 E(85289): 0.00069 Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (136-192:35-91) 110 120 130 140 150 160 pF1KE5 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE :: :.: .: .. ....:.: :..:.: NP_004 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE5 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN ... :: ::. .::: ....: ::: NP_004 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE 70 80 90 100 110 120 >>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo (128 aa) initn: 132 init1: 132 opt: 155 Z-score: 190.8 bits: 41.9 E(85289): 0.00069 Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (136-192:35-91) 110 120 130 140 150 160 pF1KE5 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE :: :.: .: .. ....:.: :..:.: NP_001 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 10 20 30 40 50 60 170 180 190 200 210 220 pF1KE5 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN ... :: ::. .::: ....: ::: NP_001 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE 70 80 90 100 110 120 >>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle (153 aa) initn: 142 init1: 126 opt: 145 Z-score: 178.1 bits: 39.8 E(85289): 0.0035 Smith-Waterman score: 145; 29.1% identity (57.3% similar) in 117 aa overlap (108-224:36-148) 80 90 100 110 120 130 pF1KE5 PAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLR : .: :.: : :. : :. .: NP_060 ADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKA-VKQKQ---IR 10 20 30 40 50 60 140 150 160 170 180 190 pF1KE5 AGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRK ::. : .:.. . ..:.: :. :::. ::..:. ..:: : .:. :: . : NP_060 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK 70 80 90 100 110 120 200 210 220 230 240 250 pF1KE5 TCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAK : : ... . : . : . .: ... NP_060 RPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 130 140 150 266 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:39:26 2016 done: Mon Nov 7 23:39:27 2016 Total Scan time: 4.690 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]