FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5304, 266 aa 1>>>pF1KE5304 266 - 266 aa - 266 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5863+/-0.00079; mu= 13.9461+/- 0.047 mean_var=73.4381+/-14.388, 0's: 0 Z-trim(108.0): 10 B-trim: 0 in 0/51 Lambda= 0.149663 statistics sampled from 9947 (9953) to 9947 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.306), width: 16 Scan time: 1.580 The best scores are: opt bits E(32554) CCDS6965.1 RPL7A gene_id:6130|Hs108|chr9 ( 266) 1732 382.9 1.3e-106 >>CCDS6965.1 RPL7A gene_id:6130|Hs108|chr9 (266 aa) initn: 1732 init1: 1732 opt: 1732 Z-score: 2027.7 bits: 382.9 E(32554): 1.3e-106 Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266) 10 20 30 40 50 60 pF1KE5 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN 190 200 210 220 230 240 250 260 pF1KE5 VLGPKSVARIAKLEKAKAKELATKLG :::::::::::::::::::::::::: CCDS69 VLGPKSVARIAKLEKAKAKELATKLG 250 260 266 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:39:26 2016 done: Mon Nov 7 23:39:26 2016 Total Scan time: 1.580 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]