FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6335, 405 aa 1>>>pF1KE6335 405 - 405 aa - 405 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8676+/-0.000339; mu= 16.2804+/- 0.021 mean_var=101.2690+/-19.787, 0's: 0 Z-trim(117.6): 18 B-trim: 75 in 1/54 Lambda= 0.127449 statistics sampled from 29759 (29777) to 29759 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.349), width: 16 Scan time: 8.250 The best scores are: opt bits E(85289) NP_057256 (OMIM: 608129) ubiquitin-associated doma ( 405) 2629 493.6 3.6e-139 XP_011543392 (OMIM: 616378) PREDICTED: UBX domain- ( 181) 189 44.7 0.00022 XP_016873363 (OMIM: 616378) PREDICTED: UBX domain- ( 297) 189 44.8 0.00033 NP_001273006 (OMIM: 616378) UBX domain-containing ( 297) 189 44.8 0.00033 NP_056937 (OMIM: 616378) UBX domain-containing pro ( 312) 189 44.9 0.00034 XP_005274090 (OMIM: 616378) PREDICTED: UBX domain- ( 312) 189 44.9 0.00034 >>NP_057256 (OMIM: 608129) ubiquitin-associated domain-c (405 aa) initn: 2629 init1: 2629 opt: 2629 Z-score: 2619.5 bits: 493.6 E(85289): 3.6e-139 Smith-Waterman score: 2629; 100.0% identity (100.0% similar) in 405 aa overlap (1-405:1-405) 10 20 30 40 50 60 pF1KE6 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MFVQEEKIFAGKVLRLHICASDGAEWLEEATEDTSVEKLKERCLKHCAHGSLEDPKSITH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 HKLIHAASERVLSDARTILEENIQDQDVLLLIKKRAPSPLPKMADVSAEEKKKQDQKAPD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 KEAILRATANLPSYNMDRAAVQTNMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 NAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTIDTP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 LPGQAPPEAEGATAAASEAAAGASATDEEARDELTEIFKKIRRKREFRADARAVISLMEM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 GFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDKGIDPDSPLFQAILDNPVVQLGL 310 320 330 340 350 360 370 380 390 400 pF1KE6 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT ::::::::::::::::::::::::::::::::::::::::::::: NP_057 TNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT 370 380 390 400 >>XP_011543392 (OMIM: 616378) PREDICTED: UBX domain-cont (181 aa) initn: 187 init1: 99 opt: 189 Z-score: 199.5 bits: 44.7 E(85289): 0.00022 Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118) 170 180 190 200 210 220 pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA ::..: :::::..:: ::: :. .... : XP_011 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA 10 20 30 230 240 250 260 270 pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT :.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: : XP_011 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP :. . .:.:: : . .:. XP_011 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA 100 110 120 130 140 150 >>XP_016873363 (OMIM: 616378) PREDICTED: UBX domain-cont (297 aa) initn: 193 init1: 99 opt: 189 Z-score: 196.6 bits: 44.8 E(85289): 0.00033 Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118) 170 180 190 200 210 220 pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA ::..: :::::..:: ::: :. .... : XP_016 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA 10 20 30 230 240 250 260 270 pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT :.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: : XP_016 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP :. . .:.:: : . .:. XP_016 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA 100 110 120 130 140 150 >>NP_001273006 (OMIM: 616378) UBX domain-containing prot (297 aa) initn: 193 init1: 99 opt: 189 Z-score: 196.6 bits: 44.8 E(85289): 0.00033 Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118) 170 180 190 200 210 220 pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA ::..: :::::..:: ::: :. .... : NP_001 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA 10 20 30 230 240 250 260 270 pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT :.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: : NP_001 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP :. . .:.:: : . .:. NP_001 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA 100 110 120 130 140 150 >>NP_056937 (OMIM: 616378) UBX domain-containing protein (312 aa) initn: 193 init1: 99 opt: 189 Z-score: 196.4 bits: 44.9 E(85289): 0.00034 Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118) 170 180 190 200 210 220 pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA ::..: :::::..:: ::: :. .... : NP_056 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA 10 20 30 230 240 250 260 270 pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT :.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: : NP_056 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP :. . .:.:: : . .:. NP_056 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA 100 110 120 130 140 150 >>XP_005274090 (OMIM: 616378) PREDICTED: UBX domain-cont (312 aa) initn: 193 init1: 99 opt: 189 Z-score: 196.4 bits: 44.9 E(85289): 0.00034 Smith-Waterman score: 225; 39.8% identity (64.6% similar) in 113 aa overlap (196-294:6-118) 170 180 190 200 210 220 pF1KE6 LLALNPDAVELFKKANAMLDEDEDERVDEAALRQLTEMGFPENRATKALQLN-HMSVPQA ::..: :::::..:: ::: :. .... : XP_005 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAA 10 20 30 230 240 250 260 270 pF1KE6 MEWLIEHAEDPTIDTPL--P-----GQAPPEAE--GATAAASEAAAGASATDEEARDELT :.::.:: .:: .: :: : :. : .: : ...: :. : : .:: :.: : XP_005 MDWLMEHEDDPDVDEPLETPLGHILGREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQT 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE6 ----EIFKKIRRKREFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKP :. . .:.:: : . .:. XP_005 KRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAEERRREKA 100 110 120 130 140 150 405 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:13:13 2016 done: Tue Nov 8 12:13:14 2016 Total Scan time: 8.250 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]