FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6203, 223 aa 1>>>pF1KE6203 223 - 223 aa - 223 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1701+/-0.00036; mu= 13.8794+/- 0.022 mean_var=57.6634+/-11.690, 0's: 0 Z-trim(113.3): 50 B-trim: 0 in 0/58 Lambda= 0.168898 statistics sampled from 22589 (22634) to 22589 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.265), width: 16 Scan time: 5.250 The best scores are: opt bits E(85289) NP_005857 (OMIM: 601978,605726,614373) sigma non-o ( 223) 1520 378.5 4.8e-105 NP_001269136 (OMIM: 601978,605726,614373) sigma no ( 203) 1188 297.6 9.9e-81 NP_001269134 (OMIM: 601978,605726,614373) sigma no ( 155) 1027 258.3 5e-69 NP_671513 (OMIM: 601978,605726,614373) sigma non-o ( 192) 808 205.0 7e-53 NP_001269137 (OMIM: 601978,605726,614373) sigma no ( 159) 800 203.0 2.3e-52 NP_001269135 (OMIM: 601978,605726,614373) sigma no ( 123) 712 181.5 5.3e-46 NP_001269138 (OMIM: 601978,605726,614373) sigma no ( 110) 703 179.3 2.2e-45 >>NP_005857 (OMIM: 601978,605726,614373) sigma non-opioi (223 aa) initn: 1520 init1: 1520 opt: 1520 Z-score: 2006.9 bits: 378.5 E(85289): 4.8e-105 Smith-Waterman score: 1520; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 130 140 150 160 170 180 190 200 210 220 pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: NP_005 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 190 200 210 220 >>NP_001269136 (OMIM: 601978,605726,614373) sigma non-op (203 aa) initn: 1181 init1: 1181 opt: 1188 Z-score: 1570.4 bits: 297.6 E(85289): 9.9e-81 Smith-Waterman score: 1344; 91.0% identity (91.0% similar) in 223 aa overlap (1-223:1-203) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR ::::::::::::::::::::::::::::::: ::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLG--------------------LDHELAFSR 10 20 30 40 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 110 120 130 140 150 160 190 200 210 220 pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: NP_001 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 170 180 190 200 >>NP_001269134 (OMIM: 601978,605726,614373) sigma non-op (155 aa) initn: 1027 init1: 1027 opt: 1027 Z-score: 1360.2 bits: 258.3 E(85289): 5e-69 Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::: NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGPLTSQA 130 140 150 >>NP_671513 (OMIM: 601978,605726,614373) sigma non-opioi (192 aa) initn: 808 init1: 808 opt: 808 Z-score: 1070.3 bits: 205.0 E(85289): 7e-53 Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-223:1-192) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::::: NP_671 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 120 130 140 190 200 210 220 pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: NP_671 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 150 160 170 180 190 >>NP_001269137 (OMIM: 601978,605726,614373) sigma non-op (159 aa) initn: 822 init1: 800 opt: 800 Z-score: 1061.1 bits: 203.0 E(85289): 2.3e-52 Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSVSC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS NP_001 AIVTQGATGLRSRIPSSLAPSTSGERAPPKVRSSTQGRR 130 140 150 >>NP_001269135 (OMIM: 601978,605726,614373) sigma non-op (123 aa) initn: 712 init1: 712 opt: 712 Z-score: 946.9 bits: 181.5 E(85289): 5.3e-46 Smith-Waterman score: 712; 100.0% identity (100.0% similar) in 105 aa overlap (119-223:19-123) 90 100 110 120 130 140 pF1KE6 WMGAMCLLHASLSEYVLLFGTALGSRGHSGRYWAEISDTIISGTFHQWREGTTKSEVFYP :::::::::::::::::::::::::::::: NP_001 MRVAGWAPCAFCTPRCPRRYWAEISDTIISGTFHQWREGTTKSEVFYP 10 20 30 40 150 160 170 180 190 200 pF1KE6 GETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYAR 50 60 70 80 90 100 210 220 pF1KE6 GLRLELTTYLFGQDP ::::::::::::::: NP_001 GLRLELTTYLFGQDP 110 120 >>NP_001269138 (OMIM: 601978,605726,614373) sigma non-op (110 aa) initn: 703 init1: 703 opt: 703 Z-score: 935.8 bits: 179.3 E(85289): 2.2e-45 Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEGDGSTRAW 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 223 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:22:55 2016 done: Tue Nov 8 03:22:55 2016 Total Scan time: 5.250 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]