FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6203, 223 aa 1>>>pF1KE6203 223 - 223 aa - 223 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1085+/-0.000804; mu= 14.2102+/- 0.048 mean_var=55.9812+/-11.606, 0's: 0 Z-trim(106.9): 18 B-trim: 545 in 2/48 Lambda= 0.171417 statistics sampled from 9236 (9246) to 9236 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.284), width: 16 Scan time: 2.170 The best scores are: opt bits E(32554) CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9 ( 223) 1520 383.8 4.7e-107 CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9 ( 192) 808 207.7 4.2e-54 >>CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9 (223 aa) initn: 1520 init1: 1520 opt: 1520 Z-score: 2035.4 bits: 383.8 E(32554): 4.7e-107 Smith-Waterman score: 1520; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 130 140 150 160 170 180 190 200 210 220 pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 190 200 210 220 >>CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9 (192 aa) initn: 808 init1: 808 opt: 808 Z-score: 1084.8 bits: 207.7 E(32554): 4.2e-54 Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-223:1-192) 10 20 30 40 50 60 pF1KE6 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::::: CCDS65 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 120 130 140 190 200 210 220 pF1KE6 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 150 160 170 180 190 223 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:22:54 2016 done: Tue Nov 8 03:22:54 2016 Total Scan time: 2.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]