FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1518, 152 aa 1>>>pF1KE1518 152 - 152 aa - 152 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0453+/-0.000374; mu= 12.3272+/- 0.023 mean_var=57.7050+/-12.133, 0's: 0 Z-trim(112.6): 43 B-trim: 889 in 1/47 Lambda= 0.168837 statistics sampled from 21561 (21600) to 21561 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.253), width: 16 Scan time: 4.970 The best scores are: opt bits E(85289) NP_058647 (OMIM: 616074) chemokine-like factor iso ( 152) 989 249.0 2.1e-66 NP_001035228 (OMIM: 616074) chemokine-like factor ( 113) 723 184.2 5.3e-47 NP_857592 (OMIM: 616074) chemokine-like factor iso ( 120) 537 138.9 2.4e-33 NP_857591 (OMIM: 616074) chemokine-like factor iso ( 99) 465 121.3 3.9e-28 NP_443725 (OMIM: 607884) CKLF-like MARVEL transmem ( 286) 333 89.4 4.6e-18 NP_851785 (OMIM: 607884) CKLF-like MARVEL transmem ( 231) 299 81.1 1.2e-15 NP_851786 (OMIM: 607884) CKLF-like MARVEL transmem ( 169) 289 78.6 4.9e-15 NP_057410 (OMIM: 616074) chemokine-like factor iso ( 67) 275 74.9 2.4e-14 NP_851787 (OMIM: 607884) CKLF-like MARVEL transmem ( 114) 255 70.2 1.1e-12 NP_612419 (OMIM: 607890) CKLF-like MARVEL transmem ( 175) 161 47.4 1.2e-05 XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like M ( 182) 144 43.2 0.00023 NP_653202 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 144 43.2 0.00023 NP_853531 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 144 43.2 0.00023 NP_653274 (OMIM: 607885) CKLF-like MARVEL transmem ( 248) 139 42.1 0.00068 XP_011531621 (OMIM: 607890) PREDICTED: CKLF-like M ( 151) 133 40.5 0.0012 XP_016861135 (OMIM: 607890) PREDICTED: CKLF-like M ( 179) 133 40.6 0.0014 NP_002659 (OMIM: 300112) proteolipid protein 2 [Ho ( 152) 131 40.0 0.0017 XP_016876442 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 122 37.9 0.0081 XP_016876443 (OMIM: 607888) PREDICTED: CKLF-like M ( 156) 122 37.9 0.0081 NP_612469 (OMIM: 607888) CKLF-like MARVEL transmem ( 156) 122 37.9 0.0081 >>NP_058647 (OMIM: 616074) chemokine-like factor isoform (152 aa) initn: 989 init1: 989 opt: 989 Z-score: 1313.0 bits: 249.0 E(85289): 2.1e-66 Smith-Waterman score: 989; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152) 10 20 30 40 50 60 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_058 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC 70 80 90 100 110 120 130 140 150 pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL :::::::::::::::::::::::::::::::: NP_058 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 130 140 150 >>NP_001035228 (OMIM: 616074) chemokine-like factor isof (113 aa) initn: 745 init1: 723 opt: 723 Z-score: 964.9 bits: 184.2 E(85289): 5.3e-47 Smith-Waterman score: 723; 99.1% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC :::::::::::::::::::::::::::::::::::::::::::::::::::.: NP_001 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF 70 80 90 100 110 130 140 150 pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL >>NP_857592 (OMIM: 616074) chemokine-like factor isoform (120 aa) initn: 790 init1: 529 opt: 537 Z-score: 719.6 bits: 138.9 E(85289): 2.4e-33 Smith-Waterman score: 730; 78.9% identity (78.9% similar) in 152 aa overlap (1-152:1-120) 10 20 30 40 50 60 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_857 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC ::::::::::::::::::: ::::::::: NP_857 LLYVLRLDRLMKWLFWPLL--------------------------------VFALVTAVC 70 80 130 140 150 pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL :::::::::::::::::::::::::::::::: NP_857 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 90 100 110 120 >>NP_857591 (OMIM: 616074) chemokine-like factor isoform (99 aa) initn: 465 init1: 465 opt: 465 Z-score: 626.1 bits: 121.3 E(85289): 3.9e-28 Smith-Waterman score: 530; 65.1% identity (65.1% similar) in 152 aa overlap (1-152:1-99) 10 20 30 40 50 60 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI :::::::::::::::::::::::::: NP_857 MDNVQPKIKHRPFCFSVKGHVKMLRL---------------------------------- 10 20 70 80 90 100 110 120 pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC ::::::::::::::::::::::::::::::::::::::::: NP_857 -------------------DIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC 30 40 50 60 130 140 150 pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL :::::::::::::::::::::::::::::::: NP_857 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 70 80 90 >>NP_443725 (OMIM: 607884) CKLF-like MARVEL transmembran (286 aa) initn: 330 init1: 295 opt: 333 Z-score: 445.3 bits: 89.4 E(85289): 4.6e-18 Smith-Waterman score: 333; 41.6% identity (72.8% similar) in 125 aa overlap (13-135:131-254) 10 20 30 40 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP : :: : .:.:::.: . ... :::.:: NP_443 ESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLKILRLSLILGALACFIITQAN 110 120 130 140 150 160 50 60 70 80 90 100 pF1KE1 EPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPE : .:.::..:. ...::::.::: : .:. .: :::::. ::..:.::. .:..::. . NP_443 ESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEK 170 180 190 200 210 220 110 120 130 140 150 pF1KE1 TTT--LTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL : :::.. .. :::. :. .. :. : NP_443 KRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGP 230 240 250 260 270 NP_443 DAPQRPA 280 >>NP_851785 (OMIM: 607884) CKLF-like MARVEL transmembran (231 aa) initn: 323 init1: 288 opt: 299 Z-score: 401.9 bits: 81.1 E(85289): 1.2e-15 Smith-Waterman score: 299; 46.0% identity (76.0% similar) in 100 aa overlap (13-110:131-230) 10 20 30 40 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP : :: : .:.:::.: . ... :::.:: NP_851 ESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLKILRLSLILGALACFIITQAN 110 120 130 140 150 160 50 60 70 80 90 100 pF1KE1 EPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPE : .:.::..:. ...::::.::: : .:. .: :::::. ::..:.::. .:..::. . NP_851 ESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEK 170 180 190 200 210 220 110 120 130 140 150 pF1KE1 TTT--LTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL : ::: NP_851 KRRHLLYVGGR 230 >>NP_851786 (OMIM: 607884) CKLF-like MARVEL transmembran (169 aa) initn: 286 init1: 251 opt: 289 Z-score: 390.9 bits: 78.6 E(85289): 4.9e-15 Smith-Waterman score: 289; 40.2% identity (73.2% similar) in 112 aa overlap (26-135:27-137) 10 20 30 40 50 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFF :.: . ... :::.:: : .:.::..:. ...:: NP_851 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 ILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTT--LTVGGGVFALVT ::.::: : .:. .: :::::. ::..:.::. .:..::. . : :::.. .. NP_851 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV 70 80 90 100 110 120 120 130 140 150 pF1KE1 AVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL :::. :. .. :. : NP_851 IVCCI-DAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 130 140 150 160 >>NP_057410 (OMIM: 616074) chemokine-like factor isoform (67 aa) initn: 275 init1: 275 opt: 275 Z-score: 378.6 bits: 74.9 E(85289): 2.4e-14 Smith-Waterman score: 281; 44.1% identity (44.1% similar) in 152 aa overlap (1-152:1-67) 10 20 30 40 50 60 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI :::::::::::::::::::::::::: NP_057 MDNVQPKIKHRPFCFSVKGHVKMLRL---------------------------------- 10 20 70 80 90 100 110 120 pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC ::::::::: NP_057 ---------------------------------------------------VFALVTAVC 30 130 140 150 pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL :::::::::::::::::::::::::::::::: NP_057 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL 40 50 60 >>NP_851787 (OMIM: 607884) CKLF-like MARVEL transmembran (114 aa) initn: 260 init1: 240 opt: 255 Z-score: 348.7 bits: 70.2 E(85289): 1.1e-12 Smith-Waterman score: 255; 44.8% identity (77.0% similar) in 87 aa overlap (26-110:27-113) 10 20 30 40 50 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFF :.: . ... :::.:: : .:.::..:. ...:: NP_851 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 ILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTT--LTVGGGVFALVT ::.::: : .:. .: :::::. ::..:.::. .:..::. . : ::: NP_851 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR 70 80 90 100 110 120 130 140 150 pF1KE1 AVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL >>NP_612419 (OMIM: 607890) CKLF-like MARVEL transmembran (175 aa) initn: 136 init1: 107 opt: 161 Z-score: 222.1 bits: 47.4 E(85289): 1.2e-05 Smith-Waterman score: 161; 27.0% identity (63.9% similar) in 122 aa overlap (18-130:42-163) 10 20 30 40 pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP--EPY . :. .:..: :: . :: ... : NP_612 CSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNY 20 30 40 50 60 70 50 60 70 80 90 pF1KE1 IVITGFEVT------VILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLAL . . :::. .:: : :....:. :.. . ::: .... :. :...::.:..: NP_612 SAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAA 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 IPE-TTTLTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL . . :.:..:..... :.:. : :. NP_612 SKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 140 150 160 170 152 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:27:12 2016 done: Mon Nov 7 02:27:13 2016 Total Scan time: 4.970 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]