Result of FASTA (ccds) for
pFN21AE1518
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1518, 152 aa
1>>>pF1KE1518 152 - 152 aa - 152 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3272+/-0.000792; mu= 10.8915+/- 0.047
mean_var=59.6848+/-12.384, 0's: 0 Z-trim(106.8): 30 B-trim: 564 in 1/47
Lambda= 0.166013
statistics sampled from 9187 (9215) to 9187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.283), width: 16
Scan time: 1.640
The best scores are: opt bits E(32554)
CCDS10807.1 CKLF gene_id:51192|Hs108|chr16 ( 152) 989 245.0 1.3e-65
CCDS45502.1 CKLF gene_id:51192|Hs108|chr16 ( 113) 723 181.2 1.5e-46
CCDS73898.1 CMTM1 gene_id:100529251|Hs108|chr16 ( 168) 639 161.2 2.5e-40
CCDS10809.1 CKLF gene_id:51192|Hs108|chr16 ( 120) 537 136.7 4.2e-33
CCDS10808.1 CKLF gene_id:51192|Hs108|chr16 ( 99) 465 119.4 5.5e-28
CCDS10812.2 CMTM1 gene_id:113540|Hs108|chr16 ( 286) 333 88.0 4.6e-18
CCDS45504.1 CMTM1 gene_id:113540|Hs108|chr16 ( 231) 299 79.8 1.1e-15
CCDS45503.1 CMTM1 gene_id:113540|Hs108|chr16 ( 169) 289 77.4 4.3e-15
CCDS10806.1 CKLF gene_id:51192|Hs108|chr16 ( 67) 275 73.9 1.9e-14
CCDS54019.1 CMTM1 gene_id:113540|Hs108|chr16 ( 114) 255 69.2 8.6e-13
>>CCDS10807.1 CKLF gene_id:51192|Hs108|chr16 (152 aa)
initn: 989 init1: 989 opt: 989 Z-score: 1291.3 bits: 245.0 E(32554): 1.3e-65
Smith-Waterman score: 989; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
70 80 90 100 110 120
130 140 150
pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
::::::::::::::::::::::::::::::::
CCDS10 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
130 140 150
>>CCDS45502.1 CKLF gene_id:51192|Hs108|chr16 (113 aa)
initn: 745 init1: 723 opt: 723 Z-score: 949.0 bits: 181.2 E(32554): 1.5e-46
Smith-Waterman score: 723; 99.1% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
:::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS45 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGLF
70 80 90 100 110
130 140 150
pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
>>CCDS73898.1 CMTM1 gene_id:100529251|Hs108|chr16 (168 aa)
initn: 636 init1: 601 opt: 639 Z-score: 837.5 bits: 161.2 E(32554): 2.5e-40
Smith-Waterman score: 639; 71.5% identity (85.4% similar) in 137 aa overlap (1-135:1-136)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTT--LTVGGGVFALVTA
::::::::::::::::::::. ::..:.::. .:..::. . : :::.. ..
CCDS73 LLYVLRLDRLMKWLFWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVI
70 80 90 100 110 120
120 130 140 150
pF1KE1 VCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
:::. :. .. :. :
CCDS73 VCCI-DAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA
130 140 150 160
>>CCDS10809.1 CKLF gene_id:51192|Hs108|chr16 (120 aa)
initn: 790 init1: 529 opt: 537 Z-score: 707.8 bits: 136.7 E(32554): 4.2e-33
Smith-Waterman score: 730; 78.9% identity (78.9% similar) in 152 aa overlap (1-152:1-120)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
::::::::::::::::::: :::::::::
CCDS10 LLYVLRLDRLMKWLFWPLL--------------------------------VFALVTAVC
70 80
130 140 150
pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
::::::::::::::::::::::::::::::::
CCDS10 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
90 100 110 120
>>CCDS10808.1 CKLF gene_id:51192|Hs108|chr16 (99 aa)
initn: 465 init1: 465 opt: 465 Z-score: 616.0 bits: 119.4 E(32554): 5.5e-28
Smith-Waterman score: 530; 65.1% identity (65.1% similar) in 152 aa overlap (1-152:1-99)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::
CCDS10 MDNVQPKIKHRPFCFSVKGHVKMLRL----------------------------------
10 20
70 80 90 100 110 120
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
:::::::::::::::::::::::::::::::::::::::::
CCDS10 -------------------DIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
30 40 50 60
130 140 150
pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
::::::::::::::::::::::::::::::::
CCDS10 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
70 80 90
>>CCDS10812.2 CMTM1 gene_id:113540|Hs108|chr16 (286 aa)
initn: 330 init1: 295 opt: 333 Z-score: 437.8 bits: 88.0 E(32554): 4.6e-18
Smith-Waterman score: 333; 41.6% identity (72.8% similar) in 125 aa overlap (13-135:131-254)
10 20 30 40
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP
: :: : .:.:::.: . ... :::.::
CCDS10 ESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLKILRLSLILGALACFIITQAN
110 120 130 140 150 160
50 60 70 80 90 100
pF1KE1 EPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPE
: .:.::..:. ...::::.::: : .:. .: :::::. ::..:.::. .:..::. .
CCDS10 ESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEK
170 180 190 200 210 220
110 120 130 140 150
pF1KE1 TTT--LTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
: :::.. .. :::. :. .. :. :
CCDS10 KRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGP
230 240 250 260 270
CCDS10 DAPQRPA
280
>>CCDS45504.1 CMTM1 gene_id:113540|Hs108|chr16 (231 aa)
initn: 323 init1: 288 opt: 299 Z-score: 395.2 bits: 79.8 E(32554): 1.1e-15
Smith-Waterman score: 299; 46.0% identity (76.0% similar) in 100 aa overlap (13-110:131-230)
10 20 30 40
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAP
: :: : .:.:::.: . ... :::.::
CCDS45 ESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLKILRLSLILGALACFIITQAN
110 120 130 140 150 160
50 60 70 80 90 100
pF1KE1 EPYIVITGFEVTVILFFILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPE
: .:.::..:. ...::::.::: : .:. .: :::::. ::..:.::. .:..::. .
CCDS45 ESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEK
170 180 190 200 210 220
110 120 130 140 150
pF1KE1 TTT--LTVGGGVFALVTAVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
: :::
CCDS45 KRRHLLYVGGR
230
>>CCDS45503.1 CMTM1 gene_id:113540|Hs108|chr16 (169 aa)
initn: 286 init1: 251 opt: 289 Z-score: 384.5 bits: 77.4 E(32554): 4.3e-15
Smith-Waterman score: 289; 40.2% identity (73.2% similar) in 112 aa overlap (26-135:27-137)
10 20 30 40 50
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFF
:.: . ... :::.:: : .:.::..:. ...::
CCDS45 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTT--LTVGGGVFALVT
::.::: : .:. .: :::::. ::..:.::. .:..::. . : :::.. ..
CCDS45 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV
70 80 90 100 110 120
120 130 140 150
pF1KE1 AVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
:::. :. .. :. :
CCDS45 IVCCI-DAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA
130 140 150 160
>>CCDS10806.1 CKLF gene_id:51192|Hs108|chr16 (67 aa)
initn: 275 init1: 275 opt: 275 Z-score: 372.7 bits: 73.9 E(32554): 1.9e-14
Smith-Waterman score: 281; 44.1% identity (44.1% similar) in 152 aa overlap (1-152:1-67)
10 20 30 40 50 60
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
::::::::::::::::::::::::::
CCDS10 MDNVQPKIKHRPFCFSVKGHVKMLRL----------------------------------
10 20
70 80 90 100 110 120
pF1KE1 LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVFALVTAVC
:::::::::
CCDS10 ---------------------------------------------------VFALVTAVC
30
130 140 150
pF1KE1 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
::::::::::::::::::::::::::::::::
CCDS10 CLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
40 50 60
>>CCDS54019.1 CMTM1 gene_id:113540|Hs108|chr16 (114 aa)
initn: 260 init1: 240 opt: 255 Z-score: 343.2 bits: 69.2 E(32554): 8.6e-13
Smith-Waterman score: 255; 44.8% identity (77.0% similar) in 87 aa overlap (26-110:27-113)
10 20 30 40 50
pF1KE1 MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFF
:.: . ... :::.:: : .:.::..:. ...::
CCDS54 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE1 ILLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTT--LTVGGGVFALVT
::.::: : .:. .: :::::. ::..:.::. .:..::. . : :::
CCDS54 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGR
70 80 90 100 110
120 130 140 150
pF1KE1 AVCCLADGALIYRKLLFNPSGPYQKKPVHEKKEVL
152 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:27:11 2016 done: Mon Nov 7 02:27:12 2016
Total Scan time: 1.640 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]