FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3643, 197 aa 1>>>pF1KE3643 197 - 197 aa - 197 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3017+/-0.00062; mu= 13.9675+/- 0.038 mean_var=71.3091+/-14.798, 0's: 0 Z-trim(112.2): 64 B-trim: 720 in 1/50 Lambda= 0.151880 statistics sampled from 12918 (12987) to 12918 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.399), width: 16 Scan time: 2.170 The best scores are: opt bits E(32554) CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 1348 303.6 5.2e-83 CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 464 109.8 8.6e-25 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 433 103.0 9.3e-23 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 432 102.8 1.1e-22 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 428 101.9 2e-22 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 426 101.5 2.7e-22 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 424 101.0 3.6e-22 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 422 100.6 5e-22 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 400 95.8 1.5e-20 CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 400 95.8 1.7e-20 CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 400 95.9 1.8e-20 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 398 95.4 2.5e-20 CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 388 93.1 7.2e-20 CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 384 92.2 1.3e-19 CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 381 91.7 3.2e-19 CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 376 90.4 4.2e-19 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 363 87.7 4e-18 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 362 87.5 4.6e-18 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 351 85.1 2.8e-17 CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 346 83.9 4.4e-17 CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 347 84.2 4.5e-17 CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 346 84.0 6.8e-17 CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 329 80.2 7.1e-16 CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 323 79.0 2e-15 CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 319 78.0 2.6e-15 CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 315 77.2 5.8e-15 CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 314 77.0 9.2e-15 CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 301 74.1 4.6e-14 CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 298 73.4 7.9e-14 CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 292 72.2 2.2e-13 CCDS11540.2 UBE2Z gene_id:65264|Hs108|chr17 ( 354) 285 70.8 1.1e-12 CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 269 67.1 6.2e-12 CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 264 66.0 1.6e-11 CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 256 64.3 4.9e-11 >>CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 (197 aa) initn: 1348 init1: 1348 opt: 1348 Z-score: 1603.8 bits: 303.6 E(32554): 5.2e-83 Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK 130 140 150 160 170 180 190 pF1KE3 RKASQLVGIEKKFHPDV ::::::::::::::::: CCDS14 RKASQLVGIEKKFHPDV 190 >>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa) initn: 451 init1: 294 opt: 464 Z-score: 558.6 bits: 109.8 E(32554): 8.6e-25 Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (6-151:7-148) 10 20 30 40 50 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE :. .: . : .:: ::: :... ... : : ..:.: :.::::...:: CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN .::. :..::.: :::::.:. ::::::.:: : :.:.: ::: ::: :.: :: CCDS31 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ ::::: :.. ..: :. ...:: ::. .: CCDS31 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 120 130 140 150 180 190 pF1KE3 KRKASQLVGIEKKFHPDV >>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa) initn: 391 init1: 259 opt: 433 Z-score: 522.0 bits: 103.0 E(32554): 9.3e-23 Smith-Waterman score: 433; 43.8% identity (67.8% similar) in 146 aa overlap (6-151:5-146) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :...:: :: .:: . :.: .: :.: ..::. ::: : . .: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .::: CCDS36 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK ::::. .:. .: .. . . ::.::::.: CCDS36 DDPLVPEIARIYKTDRDKYNRLAREWTEKYAML 120 130 140 190 pF1KE3 RKASQLVGIEKKFHPDV >>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa) initn: 390 init1: 261 opt: 432 Z-score: 520.9 bits: 102.8 E(32554): 1.1e-22 Smith-Waterman score: 432; 43.2% identity (68.5% similar) in 146 aa overlap (6-151:5-146) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :...::. :: .:: . :.: .: :.: ..::. ::: : . .: CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .::: CCDS43 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK ::::. .:. .: .. . . ::.::.:.: CCDS43 DDPLVPEIARIYKTDREKYNRIAREWTQKYAM 120 130 140 190 pF1KE3 RKASQLVGIEKKFHPDV >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 385 init1: 242 opt: 428 Z-score: 516.1 bits: 101.9 E(32554): 2e-22 Smith-Waterman score: 428; 43.2% identity (67.8% similar) in 146 aa overlap (6-151:5-146) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :...:: : .:: . :.. .: :.: .. :. ::: : : .: CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::.::.: : : ::::::.: : ::::.:. . : :.:... :: :: :. .::: CCDS72 YPFKPPKIAFTTKIYHPNINSNGSICLDILR----SQWSPALTVSKVLLSICSLLCDPNP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK ::::. ::.. .: .: . ..::.::.:.: CCDS72 DDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 120 130 140 190 pF1KE3 RKASQLVGIEKKFHPDV >>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa) initn: 384 init1: 259 opt: 426 Z-score: 513.8 bits: 101.5 E(32554): 2.7e-22 Smith-Waterman score: 426; 42.5% identity (67.8% similar) in 146 aa overlap (6-151:5-146) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :...:: :: .:: . :.: .: :.: ..::. ::: : . .: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .::: CCDS36 YPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPNP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK ::::. .:. .: .. . . .:.::.:.: CCDS36 DDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 190 pF1KE3 RKASQLVGIEKKFHPDV >>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa) initn: 381 init1: 250 opt: 424 Z-score: 511.4 bits: 101.0 E(32554): 3.6e-22 Smith-Waterman score: 424; 41.1% identity (67.1% similar) in 146 aa overlap (6-151:5-146) 10 20 30 40 50 60 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER :...:: : .:: . :.. .: :.: ..::. ::: : . .: CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTD 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP :::.::.. : : ::::::.: : ::::.:. . : :.:... :: :: :. .::: CCDS54 YPFKPPKVAFTTKIYHPNINSNGSICLDILR----SQWSPALTVSKVLLSICSLLCDPNP 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 DDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQK ::::. .:. .: .. . . ::.::.:.: CCDS54 DDPLVPEIAHTYKADREKYNRLAREWTQKYAM 120 130 140 190 pF1KE3 RKASQLVGIEKKFHPDV >>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa) initn: 384 init1: 259 opt: 422 Z-score: 508.9 bits: 100.6 E(32554): 5e-22 Smith-Waterman score: 422; 42.8% identity (67.6% similar) in 145 aa overlap (7-151:8-148) 10 20 30 40 50 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE :..:: :: .:: . :.: .: :.: ..::. ::: : . .: CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN :::.::.. : : ::::::.: : ::::.:. . : :.:.:. :: :: :. .:: CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKVLLSICSLLCDPN 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ :::::. .:. .: .. . . .:.::.:.: CCDS36 PDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 120 130 140 180 190 pF1KE3 KRKASQLVGIEKKFHPDV >>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa) initn: 371 init1: 261 opt: 400 Z-score: 482.4 bits: 95.8 E(32554): 1.5e-20 Smith-Waterman score: 400; 40.8% identity (68.7% similar) in 147 aa overlap (5-151:17-159) 10 20 30 40 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEK ::...:: .. .:::. . :.. . :. ::: .. :: CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 GVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVL ::: :.. . .:::.::.. : : ::: ::.: : ::::.:: : :.:.:. :: CCDS56 GVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK----DNWSPALTISKVL 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 TSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPE :: :... :: :::...:.... :. . :::::...: CCDS56 LSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 120 130 140 150 160 170 180 190 pF1KE3 AGDSRVHNSTQKRKASQLVGIEKKFHPDV >>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa) initn: 371 init1: 261 opt: 400 Z-score: 481.3 bits: 95.8 E(32554): 1.7e-20 Smith-Waterman score: 400; 40.5% identity (68.9% similar) in 148 aa overlap (4-151:49-192) 10 20 30 pF1KE3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDD :.:...:: .. .:::. . :.. . CCDS26 NQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYE 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE3 LRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP :. ::: .. :: ::: :.. . .:::.::.. : : ::: ::.: : ::::.:: CCDS26 WRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-- 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE3 PKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ : :.:.:. :: :: :... :: :::...:.... :. . :::::...: CCDS26 --DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 140 150 160 170 180 190 160 170 180 190 pF1KE3 KQKADEEEMLDNLPEAGDSRVHNSTQKRKASQLVGIEKKFHPDV 197 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:31:02 2016 done: Mon Nov 7 02:31:03 2016 Total Scan time: 2.170 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]