FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4438, 455 aa
  1>>>pF1KE4438 455 - 455 aa - 455 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0034+/-0.000873; mu= 19.0985+/- 0.053
 mean_var=62.2313+/-12.484, 0's: 0 Z-trim(105.8): 18  B-trim: 0 in 0/50
 Lambda= 0.162581
 statistics sampled from 8596 (8606) to 8596 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS1547.1 EPHX1 gene_id:2052|Hs108|chr1           ( 455) 3130 742.9 1.6e-214


>>CCDS1547.1 EPHX1 gene_id:2052|Hs108|chr1                (455 aa)
 initn: 3130 init1: 3130 opt: 3130  Z-score: 3965.1  bits: 742.9 E(32554): 1.6e-214
Smith-Waterman score: 3130; 100.0% identity (100.0% similar) in 455 aa overlap (1-455:1-455)

               10        20        30        40        50        60
pF1KE4 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MWLEILLTSVLGFAIYWFISRDKEETLPLEDGWWGPGTRSAAREDDSIRPFKVETSDEEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HDLHQRIDKFRFTPPLEDSCFHYGFNSNYLKKVISYWRNEFDWKKQVEILNRYPHFKTKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EGLDIHFIHVKPPQLPAGHTPKPLLMVHGWPGSFYEFYKIIPLLTDPKNHGLSDEHVFEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ICPSIPGYGFSEASSKKGFNSVATARIFYKLMLRLGFQEFYIQGGDWGSLICTNMAQLVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 SHVKGLHLNMALVLSNFSTLTLLLGQRFGRFLGLTERDVELLYPVKEKVFYSLMRESGYM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HIQCTKPDTVGSALNDSPVGLAAYILEKFSTWTNTEFRYLEDGGLERKFSLDDLLTNVML
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 YWTTGTIISSQRFYKENLGQGWMTQKHERMKVYVPTGFSAFPFELLHTPEKWVRFKYPKL
              370       380       390       400       410       420

              430       440       450     
pF1KE4 ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ
       :::::::::::::::::::::::::::::::::::
CCDS15 ISYSYMVRGGHFAAFEEPELLAQDIRKFLSVLERQ
              430       440       450     




455 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:07:48 2016 done: Sun Nov  6 01:07:49 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]