FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3584, 433 aa 1>>>pF1KE3584 433 - 433 aa - 433 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1828+/-0.000925; mu= 12.9149+/- 0.056 mean_var=73.8941+/-14.599, 0's: 0 Z-trim(106.2): 17 B-trim: 0 in 0/50 Lambda= 0.149200 statistics sampled from 8839 (8843) to 8839 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.272), width: 16 Scan time: 1.990 The best scores are: opt bits E(32554) CCDS9904.1 LGMN gene_id:5641|Hs108|chr14 ( 433) 2965 647.6 7e-186 CCDS674.1 PIGK gene_id:10026|Hs108|chr1 ( 395) 373 89.6 5.7e-18 >>CCDS9904.1 LGMN gene_id:5641|Hs108|chr14 (433 aa) initn: 2965 init1: 2965 opt: 2965 Z-score: 3450.7 bits: 647.6 E(32554): 7e-186 Smith-Waterman score: 2965; 99.8% identity (100.0% similar) in 433 aa overlap (1-433:1-433) 10 20 30 40 50 60 pF1KE3 MVWKVAVFLSVALGIGAIPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: CCDS99 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPLHR 370 380 390 400 410 420 430 pF1KE3 IKLSMDHVCLGHY ::::::::::::: CCDS99 IKLSMDHVCLGHY 430 >>CCDS674.1 PIGK gene_id:10026|Hs108|chr1 (395 aa) initn: 216 init1: 170 opt: 373 Z-score: 436.0 bits: 89.6 E(32554): 5.7e-18 Smith-Waterman score: 373; 31.0% identity (65.7% similar) in 245 aa overlap (5-239:14-255) 10 20 30 40 pF1KE3 MVWKVAVFLSVALG-IGAIPIDDPED----GGK--HWVVIVAGSNGWYNYR .:. : ...: ..: :.: . .:. .:.:.: : :.::: CCDS67 MAVTDSLSRAATVLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 HQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGT-DVY-QGVPKD : :.. .:. ..: :::: .::.:. ::.: . :: :. :... : .:: . : : CCDS67 HVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVD 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 YTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPN-EDL : . .:: .::: :: : . . .: : : .....::.: ::..:.: : . :.. CCDS67 YRSYEVTVENFLRVLTG--RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEI 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 HVKDLNETIHYMYKHKMYRKMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYY .: .... :.... : ...: :..:...::.... . :..: .... :.: . CCDS67 TNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP-NIMALASSQVGEDSLSHQP 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE3 DEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVM : ...: : :. .: CCDS67 DPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKN 240 250 260 270 280 290 433 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:34:07 2016 done: Mon Nov 7 02:34:07 2016 Total Scan time: 1.990 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]