FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9258, 286 aa 1>>>pF1KE9258 286 - 286 aa - 286 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3411+/-0.000326; mu= 15.7254+/- 0.020 mean_var=77.7255+/-15.536, 0's: 0 Z-trim(116.8): 13 B-trim: 38 in 2/48 Lambda= 0.145476 statistics sampled from 28196 (28209) to 28196 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.331), width: 16 Scan time: 7.150 The best scores are: opt bits E(85289) NP_002927 (OMIM: 604123,616479) ribonuclease H1 is ( 286) 1985 425.7 4.9e-119 NP_001273763 (OMIM: 604123,616479) ribonuclease H1 ( 260) 1802 387.3 1.7e-107 NP_001273766 (OMIM: 604123,616479) ribonuclease H1 ( 169) 1177 256.0 3.6e-68 >>NP_002927 (OMIM: 604123,616479) ribonuclease H1 isofor (286 aa) initn: 1985 init1: 1985 opt: 1985 Z-score: 2258.1 bits: 425.7 E(85289): 4.9e-119 Smith-Waterman score: 1985; 100.0% identity (100.0% similar) in 286 aa overlap (1-286:1-286) 10 20 30 40 50 60 pF1KE9 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN 190 200 210 220 230 240 250 260 270 280 pF1KE9 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED :::::::::::::::::::::::::::::::::::::::::::::: NP_002 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 250 260 270 280 >>NP_001273763 (OMIM: 604123,616479) ribonuclease H1 iso (260 aa) initn: 1802 init1: 1802 opt: 1802 Z-score: 2051.1 bits: 387.3 E(85289): 1.7e-107 Smith-Waterman score: 1802; 100.0% identity (100.0% similar) in 260 aa overlap (27-286:1-260) 10 20 30 40 50 60 pF1KE9 MSWLLFLAHRVALAALPCRRGSRGFGMFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK :::::::::::::::::::::::::::::::::: NP_001 MFYAVRRGRKTGVFLTWNECRAQVDRFPAARFKK 10 20 30 70 80 90 100 110 120 pF1KE9 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKP 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE9 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE9 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVIN 160 170 180 190 200 210 250 260 270 280 pF1KE9 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED :::::::::::::::::::::::::::::::::::::::::::::: NP_001 KEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED 220 230 240 250 260 >>NP_001273766 (OMIM: 604123,616479) ribonuclease H1 iso (169 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1344.8 bits: 256.0 E(85289): 3.6e-68 Smith-Waterman score: 1177; 100.0% identity (100.0% similar) in 169 aa overlap (118-286:1-169) 90 100 110 120 130 140 pF1KE9 GQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGC :::::::::::::::::::::::::::::: NP_001 MKPSVEPAPPVSRDTFSYMGDFVVVYTDGC 10 20 30 150 160 170 180 190 200 pF1KE9 CSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE9 YTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGF 100 110 120 130 140 150 270 280 pF1KE9 IGNEEADRLAREGAKQSED ::::::::::::::::::: NP_001 IGNEEADRLAREGAKQSED 160 286 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:34:46 2016 done: Mon Nov 7 02:34:47 2016 Total Scan time: 7.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]